BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910550

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G28380.1 | Symbols: NSL1 | MAC/Perforin domain-containing pr...   737    0.0  


> AT1G28380.1 | Symbols: NSL1 | MAC/Perforin domain-containing 
protein | chr1:9963593-9966320 FORWARD LENGTH=2202
Length=2202

 Score =  737 bits (399),  Expect = 0.0
 Identities = 468/500 (94%), Gaps = 9/500 (2%)
 Strand=Plus/Plus

Query  1    ATGGCCTATAACAATTTCACCCGCCTCGATGCTCAATCCGCCGCCAAGAAAGCCGTCTCA  60
            ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| 
Sbjct  104  ATGGCCTTTAACAATTTCACCCGCCTCGATGCTCACTCCGCCGCCGAGAAAGCCGTCTCT  163

Query  61   GTGATCGGATTAGGTTACTATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACTACA  120
            || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct  164  GTAATCGGATTAGGTTACGATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACCACA  223

Query  121  CCAGACGGTTCCAGGTTAGTCGAAATCGTCCCGACCCGGAACCGTGACTTAGTCTTCCCC  180
            || ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct  224  CCCGACGGTTCCAGGTTAGTCGAAATCGACCCGACTCGGAACCGTGACTTAATCTTCCCC  283

Query  181  GGTGGGATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACT  240
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  284  GGTGGTATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACT  343

Query  241  CGATTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  344  CGATTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATG  403

Query  301  TGTCTCTCCTGGAAGATTCCGTCGGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGT  360
            ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  404  TGTCTCTCCGGGAAGATTCCGTCAGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGT  463

Query  361  TGGCCTAAAGATGCGAGCTCTGTGAAGAATTTAGCTTAT--TGGTTC----ATTAGCTTG  414
            ||||| ||||||||||||||||| |||| ||||||||||  |||||     ||||| |||
Sbjct  464  TGGCCAAAAGATGCGAGCTCTGTTAAGACTTTAGCTTATGATGGTTGGTTTATTAGTTTG  523

Query  415  TATATACGTGTTGAGATTGTTAGGAAGCAATTGACTCTACGTGATGAAGTGAAACGTGAG  474
            ||||   |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  524  TATA---GTGTAGAGATTGTTAGGAAGCAGTTGACACTACGTGATGAAGTGAAACGTGAG  580

Query  475  GTTCCTTCTTCTTGGTACTC  494
            ||||||||||||||| ||||
Sbjct  581  GTTCCTTCTTCTTGGGACTC  600



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5