BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910584

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G08790.1 | Symbols:  | Protein of unknown function (DUF1685)...   931    0.0  


> AT1G08790.1 | Symbols:  | Protein of unknown function (DUF1685) 
| chr1:2811989-2812646 FORWARD LENGTH=573
Length=573

 Score =  931 bits (504),  Expect = 0.0
 Identities = 550/573 (96%), Gaps = 0/573 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGAGGGTAGGAGAAGCATTGAGTGTATCAACCTCATCGTCTTCATCGTTCTACGAT  60
            ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| 
Sbjct  1    ATGGTGAGGGTTGGAGAAGCATTGAGTGTATCAACCTCATCGTCGTCATCTTTCTACGAC  60

Query  61   AGCGAAGTAGAAGAGCTTCAAAAGATGCCATTGGAACCACCTAGAGTTAAGACTAAGAAA  120
            ||||||||||||||||||||||||||||||||||||||||| | || |||| ||||||||
Sbjct  61   AGCGAAGTAGAAGAGCTTCAAAAGATGCCATTGGAACCACCGAAAGCTAAGGCTAAGAAA  120

Query  121  CGTCTCTCCAAGCAACTCTCCATGTTAGAGACCCGTAGAGACATCGCATGGGAGCGTCGC  180
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGTCTCTCGAAGCAACTCTCCATGTTAGAGACCCGTAGAGACATCGCATGGGAGCGTCGC  180

Query  181  CGCCGCCAGATGCTTCATCACCTTGAGAAGCATAACGAAGGAGGAGATGACTTGACGGAC  240
            || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CGTCGCCAGATGCTCCATCACCTTGAGAAGCATAACGAAGGAGGAGATGACTTGACGGAC  240

Query  241  GAGGACTTGAGTGAGCTCAAAGGTTCTATTGAGTTAGGGTTCGGGTTTAACGAGGAGCAA  300
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  241  GAGGACTTGAGTGAGCTCAAAGGATCTATTGAGTTAGGGTTCGGGTTTAACGAGGAGCAA  300

Query  301  GGGCAACATCTTACACCTACATTGCCTGCTTTGGACCTTTACTTCGCTGTGACCCGTCAG  360
            ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  301  GGGCAACATCTTACAACTACATTGCCTGCATTGGACCTTTACTTCGCTGTGACTCGTCAG  360

Query  361  ATCTCGCCGGTTTCTACACCAGGCAGCGGTGGATCTTCTTCATCCTCCCGACCTACTTCT  420
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct  361  ATCTCGCCGGTTTCTACACCAGGCAGTGGTGGATCTTCTTCATCCTCCCGTCCTACTTCC  420

Query  421  CTTGGAGACCGATCTTCCTCTTTTGGTAGTCCTATAAGCGACTCTGATTCTTTGAAGGTT  480
            || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  421  CTCGGAGACCGATCTTCCTCTTTTGGTAGTCCAATAAGCGACTCTGATTCTTTGAAGGTT  480

Query  481  ATGTCTCCAGGAGATAATCCTCAACAGGTTAAAACGAGACTGAGGCATTGGGCACAAGCT  540
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  ATGTCTCCAGGAGATGATCCTCAACAGGTTAAAACGAGACTGAGGCATTGGGCACAAGCT  540

Query  541  GTAGCATGTTCTATGATACAATCTTCCAATTAA  573
            || ||||||||| ||||||||||||||||||||
Sbjct  541  GTGGCATGTTCTGTGATACAATCTTCCAATTAA  573



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27528312556


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5