BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910654
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09460.1 | Symbols: | Carbohydrate-binding X8 domain superf... 1548 0.0
> AT1G09460.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:3053901-3055360 FORWARD LENGTH=1263
Length=1263
Score = 1548 bits (838), Expect = 0.0
Identities = 945/996 (95%), Gaps = 9/996 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAAACAGAGTTAC-TC--CAtcttcaccttcttcttctttctttctcttctctca 57
|||||||||||||||||| || | |||||| | |||||| ||||||||||||||||||
Sbjct 1 ATGGCGAAACAGAGTTACTTCTTCGTCTTCA-C--CTTCTTGTTTCTTTCTCTTCTCTCA 57
Query 58 tcctgttcttcAACAACTACACATCATGATGTGTTAAACCCACCAACGGTCTTTCCTACA 117
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TACTGTTCTTCAACAACTACACATCATGATGTGTTAAACCCACCAACGGTCTTTCCTACA 117
Query 118 AACCCTACAACTACACCGCCGGCTACATTTCCTCCGGTTACCATAACGCCAACAAACCCA 177
||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| |||
Sbjct 118 AACCCCACAACTACACCGACGGCTACATTTCCTCCGGTGACCATAACGCCAACAAATCCA 177
Query 178 GCCACAACAGTTCCTATTGTTCCTCCTGTCACAACTATtcctcctcctacactcacacca 237
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 178 GCCACAACAGTTCCTATTGTTCCTCCAGTCACAACTATTCCACCTCCTACACTCACACCA 237
Query 238 cctccagtcacaacaattcctcctcctacactcacaccacctGTGACAAACCCAGTTACC 297
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 CCTCCAGTCATAACAATTCCTCCTCCTACACTCACACCACCTGTGACAAACCCAGTAACC 297
Query 298 AACCCAGTGACTCAGTATCCTCCAACACAACCCTCAGGGGCGGTTCCAGTTCCTGTTCCT 357
||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 298 AACCCAGTGACTCAGTATCCTCCAACACAACCCTCAGGGACGGTCCCAGTACCTGTTCCT 357
Query 358 GTGGTTGCACCGCCTGTTGTCTCAAACTCTCCATCGGTTCCAGGTCAAAGCTGGTGCGTG 417
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 358 GTGGTTGCACCGCCTGTTGTCTCAAACTCTCCATCGGTTTCAGGCCAAAGCTGGTGTGTG 417
Query 418 GCAAAGCCTGGAGCCTCTCAAATCTCACTCCAACAGGCTCTTGACTATGCCTGCGGGATC 477
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCCAAGCCTGGAGCCTCTCAAGTCTCACTCCAACAGGCTCTTGACTATGCCTGCGGGATC 477
Query 478 GCGGATTGCTCTCAATTACAGCAAGGCGGTAACTGTTATTCTCCTATCAATCTTCAGAAT 537
||||||||||||||| ||||||||||||| || |||||||||||||||| |||||||| |
Sbjct 478 GCGGATTGCTCTCAACTACAGCAAGGCGGCAATTGTTATTCTCCTATCAGTCTTCAGAGT 537
Query 538 CATGCCTCATTTGCCTTCAACAGCTATTACCAGAAGAACCCTTCTCCACAAAGCTGCGAT 597
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 538 CATGCCTCATTTGCCTTCAACAGCTATTACCAGAAGAATCCTTCTCCACAAAGCTGTGAT 597
Query 598 TTTGGCGGTGTAGCCTCGGTAGTTAACACCAACCCAAGCACTGGTTCTTGCATTTACCAG 657
|||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 598 TTTGGCGGTGCAGCCTCATTAGTTAACACCAACCCAAGCACTGGTTCTTGTATATACCAG 657
Query 658 ACAGGCTCATCGACATCAACACCGATGACAGCAGGAACAACAACACCAACTCCATCAACA 717
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 658 ACAGGTTCATCGACATCAACACCAATGACAGCAGGAACAACAACACCAACTCCATCAACA 717
Query 718 CAAACAGTGAACCAGCCTCCTGTCACATCAACACCTATAATACCAACAGGAGGCGGGATA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CAAACAGTGAACCAGCCTCCTGTCACATCAACACCTATAATACCAACAGGAGGCGGGATA 777
Query 778 ATCGGGGTTGGAACTCCACCAGCGATCTTCAACCCCGCGAATCCTACATCAAATACGCTA 837
||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||||
Sbjct 778 ATCGGGGTTGGAACTCCGCCAGCGATTTTTAACCCCGCAAATCCTACATCAAATACGCTA 837
Query 838 AACAATCCATCCTCAGGAGGTTTAACGGGT--T-ACGGTTTTGATGGTTCACCAAATGGG 894
|||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||| |
Sbjct 838 AACAATCCATCCTCAGGAGGTTTAGCGGGTGGTTACGGTTTTGATGGTTCGCCAAATGAG 897
Query 895 AACAATCCAACATCATCAGACTCTACACACTTGAAGATTCACTTTGGTCATGCTATAATG 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 898 AACAATCCAACATCATCAGACTCTACACACTTGAAGATTCACTTTGGTCATGCTATGGTG 957
Query 955 GCAACATTGATTCTTCACGCAGTGCTATTTCATTAG 990
||||||||||||||||||||||||||||||||||||
Sbjct 958 GCAACATTGATTCTTCACGCAGTGCTATTTCATTAG 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5