BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910662
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09560.1 | Symbols: GLP5 | germin-like protein 5 | chr1:3093... 1053 0.0
> AT1G09560.1 | Symbols: GLP5 | germin-like protein 5 | chr1:3093839-3094864
FORWARD LENGTH=942
Length=942
Score = 1053 bits (570), Expect = 0.0
Identities = 631/661 (95%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCACCAACTCAAACTCTCCTCCTCCTCCTCACCACCGTCTTCTTCTTCATCTCC 60
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 58 ATGGCTTCACCAACTCTTACTCTCCTCCTCCTCCTCACCACCGTCTCCTTCTTCATCTCC 117
Query 61 GCTTCCGCAGATCCGGACATGCTTCAAGATCTCTGCGTTGCTGATCTTCCCTCTGGAATC 120
| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 118 TCCTCCGCAGATCCTGACATGCTTCAAGATCTCTGCGTCGCTGATCTTCCCTCTGGAATC 177
Query 121 AAGATCAATGGCTTCCCTTGTAAAGACGCAGCTACAGTCACATCGGCTGATTTCTTCTCA 180
|| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 178 AAAATCAATGGCTTCCCTTGCAAAGACGCAGCTACAGTCACATCAGCCGATTTCTTCTCA 237
Query 181 CAAGGATTAGCTAATCCAGGTCTTACCAACAACACATTCGGTGCCTTGGTCACAGGAGCT 240
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 CAAGGATTAGCTAAACCAGGTCTTACCAACAACACATTCGGTGCCTTAGTCACAGGAGCT 297
Query 241 AACGTTATGACAATCCCAGGACTCAACACACTCGGTGtctctctctctcGTATCGACTAC 300
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 298 AACGTTATGACAATCCCAGGACTCAACACACTTGGTGTCTCCCTCTCTCGTATCGACTAC 357
Query 301 GCACCCGGAGGCTTAAACCCACCTCACACCCACCCTCGTGCCACTGAAATCGTCTTT-GT 359
||||| ||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||
Sbjct 358 GCACCAGGAGGCTTAAACCCACCTCACACCCACCCACGTGCCACTGAGGTCGT-TTTCGT 416
Query 360 CCTCGAAGGAACACTTGATGTTGGGTTCCTCACTACGGCCAATAAGCTCATCTCTCAATC 419
|||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||
Sbjct 417 CCTCGAAGGAACACTTGACGTTGGGTTTCTCACTACTGCCAATAAGCTAATCTCTCAATC 476
Query 420 TCTCAAGAAAGGAGATGTCTTTGCTTTCCCTAAAGGACTTGTCCATTTCCAGAAGAACAA 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 477 TCTCAAGAAAGGAGATGTCTTTGCTTTCCCCAAAGGACTTGTCCATTTCCAGAAGAACAA 536
Query 480 TGGTCATGTTCCTGCTTCTGTTATTGCAGCTTTCAATAGTCAGCTTCCTGGAACTCAATC 539
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGGTGATGTCCCTGCTTCTGTTATTGCAGCTTTCAATAGTCAGCTTCCTGGAACTCAATC 596
Query 540 TCTTGGTGCTACTTTGTTTGGTTCTACTCCTCCTGTTCCTGACAACATCTTGGCTCAAGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCTTGGTGCTACTTTGTTTGGTTCTACTCCTCCTGTTCCTGACAACATCTTGGCTCAAGC 656
Query 600 CTTTCAGACCTCTTCAGGAACTGTTAAACACATCAAATCCAAGTTCCAACCCAAGAAATG 659
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTTTCAGACTTCTCCAGGAACTGTTAAACACATCAAATCCAAGTTCCAACCCAAGAAATG 716
Query 660 A 660
|
Sbjct 717 A 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5