BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910664
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09575.1 | Symbols: | Protein of unknown function (DUF607) ... 1404 0.0
AT1G57610.1 | Symbols: | Protein of unknown function (DUF607) ... 523 1e-147
> AT1G09575.1 | Symbols: | Protein of unknown function (DUF607)
| chr1:3101671-3102925 REVERSE LENGTH=1152
Length=1152
Score = 1404 bits (760), Expect = 0.0
Identities = 844/884 (95%), Gaps = 7/884 (1%)
Strand=Plus/Plus
Query 1 ATGTGGTCAATGGGTTTGATAAGGCGTACGGCAATGTCCAGCGCCATTAGAGCTTCTTCG 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 94 ATGTGGTCAATGGGTTTGATAAGGCGTACGGCAATGTCCAATGCCATTAGAGCTTCTTCG 153
Query 61 CAAAGGACATGGCTTGGTAATGGTGGATTAAGAAGCTGCGTCACCGTCAAAACTCCGTCG 120
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 154 CAAAGGACATGGCTTGGTCACGGTGGATTAAGAAGCTGCGTCACCGTCAAAACACCGTCG 213
Query 121 TCATCGGAGGAGGAAGAGAAGAAGAAAGAGATAACTATAGCGGAAGCGAAGAAGCTAATG 180
| ||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 -GA--GGATGAAGAGGAGAAGAAGAAAGAGATAACTATAGCGGAAGCGAAGAAGCTAATG 270
Query 181 AGGCTTGTGAATGTTGAAGACATGAAGAAGAAGCTTGTTGGTATAGCTGATAGAGATGTC 240
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 271 AGGCTTGTGAATGTTGAAGACATGAAGAAGAAGCTTGTTGGTGTGGCTGATAGAGATGTT 330
Query 241 GTCCCTTACACTACACTTTTAGAAGCTTCTCAAGGAATGGGTATCGCTAGATCTCCTGAT 300
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 331 GTCTCTTACTCTACACTTTTAGAAGCTTCTCAAGGAATGGGTATCGCTAGATCTCCCGAT 390
Query 301 GAAGCTCATATCTTTGCTCGTGTTCTTGACGATGCCGGCGTTGTCTTGATCTTTCGAGAT 360
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 391 GAAGCTCATGTCTTTGCTCGTGTTCTTGACGATGCTGGCGTTGTCTTGATCTTTCGTGAT 450
Query 361 AAAGTCTTTCTTCACCCAGACAAGGTGGTGGATCTGATTAGAAGAGCGATGCCTTTGGAA 420
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 AAAGTCTATCTTCACCCAGACAAGGTGGTGGATCTGATTAGAAGAGCGATGCCTTTGGAC 510
Query 421 CAGAATCCAGAGGAAGATCAAATCAAGGAAGAATTCAACAAACTT-AGAATCATGAAAGA 479
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 511 CAGAATCCAGAGGAAGATCAAATCAAGGAAGAATTCAACAAA-TTGAGAATCATGAAAGA 569
Query 480 AGAGATTGATGTGTTAGCGCATAGACAAGTGAGGAAGATTCTTTGGTGCGGTTTAGCTAC 539
|||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 570 AGAGATTGATGTTTTGGCTCATAGACAAGTGAGGAAGATTCTTTGGTGTGGTTTAGCTAC 629
Query 540 TTCGATGGTTCAAATTGGGCTCTTTTTTAGACTAACTTTCTGGGAATTCTCATGGGATGT 599
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 630 TTCGATGGTTCAAATTGGACTCTTTTTTAGATTAACTTTCTGGGAATTCTCATGGGATGT 689
Query 600 GATGGAACCAATCACTTTCTTCGCTACAGCGACTGGAATCATTGTGGGTTATGCTTATTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GATGGAACCAATCACTTTCTTCGCTACAGCGACTGGAATCATTGTGGGTTATGCTTATTT 749
Query 660 CTTGATGACTTCGAGAGATCCGACATATCAGGATTTCATGAAGAGGCTCTTCTTGTCGAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 CTTGATGACTTCGAGAGATCCGACATATCAGGATTTCATGAAGAGGCTCTTCTTGTCGAG 809
Query 720 ACAGAGGAAGTTGTTGAAAAGTCATAAGTTTGATTGTGATAGGTTTAAGGAATTGGAGAG 779
|||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||
Sbjct 810 ACAGAGGAAGTTGTTGAAGAGTCATAAGTTTGACTGCGAGAGGTTTAAGGAATTGGAGAG 869
Query 780 GAT-TTGTAAAATGACGTCATCTTGTCATGCAGCTGCGTCTATAAGGAATCGTGTTGGAT 838
| | || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 870 GTTATT-TAAAATGACGTCGTCTTGTCATGCAGCTGCGTCTATAAGGAATCGTGTTGGAT 928
Query 839 TAGAACTTGATCTCGAGGATGCTTTGCAGAGTCGCAGAGACTGA 882
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 929 TAGAACTTGATCTCGAGGATGCTTTGCAGAGTCGCAGGGACTGA 972
> AT1G57610.1 | Symbols: | Protein of unknown function (DUF607)
| chr1:21337235-21338656 REVERSE LENGTH=1340
Length=1340
Score = 523 bits (283), Expect = 1e-147
Identities = 522/633 (82%), Gaps = 34/633 (5%)
Strand=Plus/Plus
Query 163 GAAGCGAAGAAGCTAATGAGGCTT-GTGAATGTTGAAGACATGAAGAAGAAGCTTGTTGG 221
||||| |||||| |||||| | || |||||||||||||| ||||||||||||||| ||||
Sbjct 392 GAAGCTAAGAAGTTAATGA-GATTAGTGAATGTTGAAGATATGAAGAAGAAGCTTATTGG 450
Query 222 TATAGCTGATAGAGATGTCGTCCCTTACACTACACTT-TTAGAAGCTTCTCAAGGAATGG 280
||| | ||||| ||| | || |||||||||||||| || ||||| |||||||| | |
Sbjct 451 TATGGGTGATAAAGAAATGGTTACTTACACTACACTTATT-GAAGCATCTCAAGGTTTAG 509
Query 281 GTATCGCTAGATCTCCTGATGAAGCTCATATC-TTTGCTCGTGTTCTTGACGATGCCGGC 339
||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||| ||
Sbjct 510 GTATCGCTAGATCTCTTGATGAAGCTCAT-GCTTTTGCTCGTGTTCTTGATGATGCTGGT 568
Query 340 GTTGTCTTGATCTTTCGAGATAAAGTCTTTCTTCACCCAGACAAGGTGGTGGATCTGATT 399
||| | ||||||||||| |||||||||| |||||| || | |||||||||||| |||||
Sbjct 569 GTTATTTTGATCTTTCGTGATAAAGTCTATCTTCATCCTCATAAGGTGGTGGATTTGATT 628
Query 400 AG-AAGAGCGA-TGCCTTT-GGAACAGAATCCAGAGGAAGA-TCAAATCAAG-GAAGAAT 454
|| ||| || | ||||||| || ||||||||| || || | || || ||||| |
Sbjct 629 AGAAAG-GC-AGTGCCTTTAGG-TTTGAATCCAGATGATGAGT-TGAT-TAGAGAAGAGT 683
Query 455 TCAACAA-ACTTAGAA-TCATGAAAGAAGAGATTGATGTGTTAGCGCAT-AGACAAGTGA 511
| | || | | |||| | ||||| |||||||||||||||||||| ||| | ||||||||
Sbjct 684 TTGATAAGA-TGAGAAGT-ATGAAGGAAGAGATTGATGTGTTAGCTCATCA-ACAAGTGA 740
Query 512 GGAAGATTCTTTGGTGCGGT-TTAGCTACTTCGA-TGGTTCAAATTGGGCTCTTTTTTAG 569
|||||||||| ||| | ||| || | ||| || | ||||||||||||| ||||| ||||
Sbjct 741 GGAAGATTCTATGGGGTGGTCTTGGTTAC-TC-AGTGGTTCAAATTGGAATCTTTGTTAG 798
Query 570 ACTAACTTTCTGGGAATTCTCATGGGATGTGATGGAACCAATCAC-TTTCTTCGCTACAG 628
|||||||| ||||| || || |||||||||||||||||||| || ||| ||| ||||||
Sbjct 799 GCTAACTTTTTGGGAGTTTTCTTGGGATGTGATGGAACCAATAACGTTT-TTCACTACAG 857
Query 629 CGACTGGAATCATTGTGGGTTATGCTTATTTCTTGATGACTTCGAGAGATCCGACATATC 688
| ||||| || |||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 858 CTACTGGGATTATTGTGGGTTATGCTTATTTCTTGATGACTTCTAGAGATCCAACGTATC 917
Query 689 AGGATTTCATGAAGAGGCTCTT-CTTGTCGAGACAGAGGAAGTTG-TTGAAAAGTCATAA 746
| ||||||||||| ||| | || ||| || || |||||||||||| || || ||||||||
Sbjct 918 AAGATTTCATGAAAAGGTTGTTTCTT-TCCAGGCAGAGGAAGTTGCTT-AAGAGTCATAA 975
Query 747 GTTTGATTG-TGATAGGTTTAAGGAATTGGAGA 778
||||||| | ||| |||||||| ||| ||||||
Sbjct 976 GTTTGAT-GCTGAGAGGTTTAAAGAACTGGAGA 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43050663979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5