BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910676

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09665.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) dom...   752    0.0  


> AT1G09665.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) domain 
family protein | chr1:3133095-3133674 FORWARD LENGTH=498
Length=498

 Score =  752 bits (407),  Expect = 0.0
 Identities = 455/479 (95%), Gaps = 0/479 (0%)
 Strand=Plus/Plus

Query  1    ATGAAAAGGAGTAGTAGTAATAGGAAGATCCAAGTGTTCATCAATTTCCGGGGAGAGGAG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAAAGGAGTAGTAGTAATAGGAAGATCCAAGTGTTCATCAATTTCCGGGGAGAGGAG  60

Query  61   CTACGCTGCAGCTTCGTGAGCCACCTCGTTGAGGCCTTTAAAAGGCATGGGATCAACTTC  120
            |||||||||||||| ||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct  61   CTACGCTGCAGCTTTGTGAGCCACCTCGTTGACGCTTTTAAAAGACATGGAATCAACTTC  120

Query  121  TTCATAGACAAAGACGAACAAAAGGGGAAAGACCTTAAACATCTCTTTGCAAGGATCAAG  180
            ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  121  TTCATAGACAAAGACGAACAAAAAGGGAAAGACCTCAAACATCTCTTTGCAAGGATCAAG  180

Query  181  CAATCGAGGATGGCCCTCGCTATATTTTCAAAAAGGTACGCAGAGTCAAGCTGGTGCCTG  240
            |||||||||||||| ||| | |||||||| ||||| ||||||||||||||||||||||||
Sbjct  181  CAATCGAGGATGGCTCTCACCATATTTTCCAAAAGATACGCAGAGTCAAGCTGGTGCCTG  240

Query  241  GACGAGCTTGCAAGGATCAAGAAAAGAGCCGATCAACGCAAGCTACGAGTGGTTCCCATC  300
            ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct  241  GACGAGCTTGCAAGGATCAAGAAAAGAGCCGATAAATGCAAGCTACGAGTGGTTCCTATC  300

Query  301  TTCTTCAAAGTGAAGGCAGAGTCTGTGAGATACCAAGAGGCTGAGTTTGGTCGCAACTTC  360
            ||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||
Sbjct  301  TTCTTTAAAGTGAAGGCAGAGTCTGTTAGATATCAAAAGGCTGAGTTTGGTCGCAACTTC  360

Query  361  TGGAGGTTGGCTAAGACTTCCAGTGGTGAACAGATCAAGAGATGGAAGGAAGCTCTAGAG  420
            |||||||||||||||||||| ||||| ||||| ||||||| ||||||||||||| |||||
Sbjct  361  TGGAGGTTGGCTAAGACTTCGAGTGGAGAACAAATCAAGAAATGGAAGGAAGCTTTAGAG  420

Query  421  TCTGTTTCTGACAAGGTGGGCTTAACGTTAGGCGACAAAAGAACAAACAAATGGGTCCA  479
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TCTGTTTCTGACAAGGTGGGCTTAACGTTAGGCGACAAAAGAACAAACAAATGGGTCCA  479



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5