BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910703
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09880.1 | Symbols: | Rhamnogalacturonate lyase family prot... 2981 0.0
> AT1G09880.1 | Symbols: | Rhamnogalacturonate lyase family protein
| chr1:3208828-3211653 REVERSE LENGTH=1896
Length=1896
Score = 2981 bits (1614), Expect = 0.0
Identities = 1807/1900 (95%), Gaps = 13/1900 (1%)
Strand=Plus/Plus
Query 104 TGGAGAATGGAATTTTT-CAATTAACTTTATCAAATCCTGAGGGATTT-GTCACGGGAAT 161
|||||||| | |||||| |||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 2 TGGAGAATAG-ATTTTTACAATTAACTTTATCAAATCCTGAGGG-TTTCGTCACCGGAAT 59
Query 162 CCGGTACAATGGTATCGAAAATGTGCTCG-C--GTACACGGGCAAAGAATATGATAGAGG 218
|| ||| ||||||||||| |||||||||| | ||||| ||||||||||||||||||
Sbjct 60 CCAGTATAATGGTATCGACAATGTGCTCGCCTACTACACCAACAAAGAATATGATAGAGG 119
Query 219 TTACTGGGACTTAGTGTGGAACTTTCCTGGCAAAAAAGCTAAAAAGACCAAAGGCACGCT 278
|||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||| ||
Sbjct 120 TTACTGGGACGTAGTGTGGAACTTCCCTGGGAAAAAGGCTAAAAAGACCAAAGGCACACT 179
Query 279 AGACCGGATTGAAGCAACAAAGATGGAAGTGATTACGCAGAACGATGA-ACAGATAGAGC 337
|||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||
Sbjct 180 AGACCGGATTGAAGCAACAAAGATGGAAGTGATTACACAGAACGATGAGA-AAATAGAGC 238
Query 338 TATCGTTTACAAGAACATGGAATACGTCTTCAACGACGGCTGTTCCAGTGAATATAGACA 397
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 239 TATCGTTTACAAGGACATGGAATACATCTTCAACTACGGCTGTTCCAGTGAATATAGACA 298
Query 398 AGAGGTTTGTAATGCTGCGGAACTCCTCGGGATTCTACAGTTACGCCATCTTCGAGCGGT 457
|||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 299 AGAGGTTTGTAATGCTGCAAAACTCGTCCGGATTCTACAGTTACGCCATCTTCGAACGGT 358
Query 458 TACAAGGATGGCCTGCTGTTGAACTCGATAATATGCGATTAGTATTTAAGCTAAACAAGG 517
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TACAAGGATGGCCCGCTGTTGAACTCGATAATATGCGATTAGTATTTAAGCTAAACAAGA 418
Query 518 ACAAGTTTCATTACATGGCGATTTCAGATGACAGGCAAAGGTACATGCCTTTGCCAGATG 577
| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 AAAAATTTCATTACATGGCGATTTCAGATGACAGGCAAAGGTACATGCCTGTGCCAGATG 478
Query 578 ATCGGATTCCGCCTCGTGGTCAACCTCTTGCTTATCCTGAGGCAGTTCAACTTCTCGACC 637
||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 479 ATCGGGTTCCGCCTCGTGGTCAGCCTCTTGCTTATCCCGAGGCAGTTCAACTTCTTGACC 538
Query 638 CTATTGAGCCCGAGTTTAAAGGAGAGGTGGATGACAAGTATGAATACTCAATGGAGAGTA 697
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 CTATCGAGCCCGAGTTTAAAGGAGAGGTGGATGACAAGTATGAGTACTCAATGGAGAGTA 598
Query 698 AAGACATAAAAGTTCATGGATGGATAAGTACAAATGATTCAGTTGGGTTTTGGCAAATCA 757
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 599 AAGACATAAAAGTTCATGGATGGATAAGCACAAATGATTCAGTTGGGTTCTGGCAAATCA 658
Query 758 CTCCAAGCAACGAGTTCCGATCTGCTGGCCCTCTCAAGCAATTCCTAGGCTCCCATGTCG 817
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 659 CTCCAAGCAATGAGTTCCGTTCTGCTGGGCCTCTCAAGCAATTCCTAGGCTCCCATGTCG 718
Query 818 GTCCAACCAACCTTGCGATATTTCACAGTACTCACTATGTTGGAGCAGAACTAATCATGA 877
||||||| ||||||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 719 GTCCAACTAACCTTGCGGTATTTCACAGCACTCACTATGTTGGAGCAGACCTAATCATGA 778
Query 878 GTTTTAAAAACGGTGAAGCATGGAAGAAAGTGTTTGGACCTGTCTTTATTTATCTCAACT 937
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 779 GTTTTAAAAACGGTGAAGCATGGAAGAAAGTATTTGGACCTGTCTTCATTTATCTCAACT 838
Query 938 CTTTTCCTAAAGGAGTTGATCCTCTCTTGCTCTGGCATGAAGCCAAGAACCAGACAAAGA 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CTTTTCCTAAAGGAGTTGATCCTCTCTTGCTCTGGCATGAAGCCAAGAACCAGACAAAGA 898
Query 998 TTGAAGAAGAGAAGTGGCCTTATAACTTCACCGCTTCAGATGATTTTCCTGCATCTGACC 1057
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGAAGAAGAAAAGTGGCCTTATAACTTCACCGCTTCAGATGATTTTCCTGCATCTGACC 958
Query 1058 AAAGAGGATCTGTTAGCGGTAGATTAGTCGTAAGAGACAGATTCATAAGTAGTGAGGATA 1117
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 959 AAAGAGGATCTGTTAGCGGTAGATTACTCGTAAGAGACAGATTCATAAGTAGTGAGGATA 1018
Query 1118 TACCTGCAAATGGTTCCTATGTGGGCTTGGCTGTACCAGGAGATGTTGGCTCATGGCAAA 1177
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1019 TACCTGCAAATGGTTCCTATGTGGGCTTGGCTGCACCAGGAGATGTTGGCTCATGGCAAA 1078
Query 1178 GAGAATGCAAAGGTTATCAATTCTGGTCTAAAGCAGACGAAAATGGATATTTTTCTATCA 1237
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1079 GAGAATGCAAAGGTTATCAATTCTGGTCTAAAGCAGACGAAAATGGATCTTTTTCTATCA 1138
Query 1238 ATAATGTGAGAAGTGGTCGTTATCATCTCTATGCATTTGCTCCGGGATTCATCGGTGATT 1297
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1139 ATAATGTGAGAAGTGGTCGTTATAATCTCTATGCATTTGCTCCGGGATTCATCGGTGATT 1198
Query 1298 ACCACAACGACACTGTTTTTGACATTTCTCCAGGCTCAAAGATTAGCCTAGGAGACTTGG 1357
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1199 ACCACAACGACACCGTTTTTGACATTTCTCCAGGCTCAAAGATTAGCTTAGGAGACTTAG 1258
Query 1358 TGTATGAACCTCCTAGAGACGGTTCAACTCTATGGGAAATCGGTGTACCAGACCGAAGCG 1417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGTATGAGCCTCCTAGAGACGGTTCAACTCTATGGGAAATCGGTGTACCAGACCGAAGCG 1318
Query 1418 CTGCAGAGTTCTACATTCCTGACCCGAATCCAAGCTTTGTAAACAAACTATACTTAAACC 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CTGCAGAGTTCTACATTCCTGACCCGAATCCAAGCTTTGTAAACAAACTATACTTAAACC 1378
Query 1478 ATTCTGATAAAT-TCCGACAATATGGATTGTGGGAACGATATTCAGAATTGTACCCCGAT 1536
|||||||||||| || ||||||| |||||||||||||| ||||||||| |||||||||||
Sbjct 1379 ATTCTGATAAATATC-GACAATACGGATTGTGGGAACGCTATTCAGAACTGTACCCCGAT 1437
Query 1537 GAAGATATGGTCTACAATGTTGATGCTGATGATTACTCTAAGAAA-TGGTTCTTCATGCA 1595
|||||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||
Sbjct 1438 GAAGATATGGTCTACAATGTTGATATTGATGACTACTCTAA-AAACTGGTTCTTCATGCA 1496
Query 1596 AGTTACAAGGAAGCACGCAAATGGTGGATATAACGGTACAACATGGCAGATCAGATTTCA 1655
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1497 AGTTACAAGGAAGCAAGCAAATGGAGGATATAAAGGTACAACATGGCAGATCAGATTTCA 1556
Query 1656 ATTCGACGATAAAATGAAAAACTTAACCGGAAACTTCAAACTTCGAATCGCTCTAGCAAC 1715
||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||
Sbjct 1557 GTTCGACGATAAAATGAAAAACGTAACCGGAAACTTCAAACTGCGAATCGCTTTAGCCAC 1616
Query 1716 ATCAAATGTAGCAGAATTGCAGGTTCGGGTGAACGATCTTTCTGCAGATCCTCCATTGTT 1775
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1617 ATCAAACGTAGCAGAATTGCAGGTTCGGGTGAACGATCTTTCTGCAGACCCTCCATTGTT 1676
Query 1776 TACGACAGAGCAAATAGGAAGGGATAATACAATCGCAAGGCATGGTATTCATGGACTATA 1835
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TAGGACAGAGCAAATAGGAAGGGATAATACAATCGCAAGGCATGGTATTCATGGACTATA 1736
Query 1836 TTGGTTATACAATGTGAATGTGCCTGCTGCTTCTCTTCACCTGGGAAATAACACCATATA 1895
||||||||| | ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1737 TTGGTTATATAGTGTGAATGTTCCTGCTGCTTCTCTTCACGTGGGAAATAACACCATATA 1796
Query 1896 TCTAACTCAACCGCTCGCCACGAGTCCTTTTCAAGGACTCATGTATGATTATATTCGTCT 1955
|||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1797 TCTAACTCAAGCGCTCGCCACAAGCCCTTTTCAAGGACTCATGTATGATTATATTCGTCT 1856
Query 1956 TGAATATCCTGATTCCATCAATTATATTACTAAATCATAG 1995
|||||||||||||||||||||||||||||||| |||||||
Sbjct 1857 TGAATATCCTGATTCCATCAATTATATTACTAGATCATAG 1896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844873105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5