BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg910703 Length=1995 Score E Sequences producing significant alignments: (Bits) Value AT1G09880.1 | Symbols: | Rhamnogalacturonate lyase family prot... 2981 0.0 > AT1G09880.1 | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3208828-3211653 REVERSE LENGTH=1896 Length=1896 Score = 2981 bits (1614), Expect = 0.0 Identities = 1807/1900 (95%), Gaps = 13/1900 (1%) Strand=Plus/Plus Query 104 TGGAGAATGGAATTTTT-CAATTAACTTTATCAAATCCTGAGGGATTT-GTCACGGGAAT 161 |||||||| | |||||| |||||||||||||||||||||||||| ||| ||||| ||||| Sbjct 2 TGGAGAATAG-ATTTTTACAATTAACTTTATCAAATCCTGAGGG-TTTCGTCACCGGAAT 59 Query 162 CCGGTACAATGGTATCGAAAATGTGCTCG-C--GTACACGGGCAAAGAATATGATAGAGG 218 || ||| ||||||||||| |||||||||| | ||||| |||||||||||||||||| Sbjct 60 CCAGTATAATGGTATCGACAATGTGCTCGCCTACTACACCAACAAAGAATATGATAGAGG 119 Query 219 TTACTGGGACTTAGTGTGGAACTTTCCTGGCAAAAAAGCTAAAAAGACCAAAGGCACGCT 278 |||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||| || Sbjct 120 TTACTGGGACGTAGTGTGGAACTTCCCTGGGAAAAAGGCTAAAAAGACCAAAGGCACACT 179 Query 279 AGACCGGATTGAAGCAACAAAGATGGAAGTGATTACGCAGAACGATGA-ACAGATAGAGC 337 |||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||| Sbjct 180 AGACCGGATTGAAGCAACAAAGATGGAAGTGATTACACAGAACGATGAGA-AAATAGAGC 238 Query 338 TATCGTTTACAAGAACATGGAATACGTCTTCAACGACGGCTGTTCCAGTGAATATAGACA 397 ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 239 TATCGTTTACAAGGACATGGAATACATCTTCAACTACGGCTGTTCCAGTGAATATAGACA 298 Query 398 AGAGGTTTGTAATGCTGCGGAACTCCTCGGGATTCTACAGTTACGCCATCTTCGAGCGGT 457 |||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||| Sbjct 299 AGAGGTTTGTAATGCTGCAAAACTCGTCCGGATTCTACAGTTACGCCATCTTCGAACGGT 358 Query 458 TACAAGGATGGCCTGCTGTTGAACTCGATAATATGCGATTAGTATTTAAGCTAAACAAGG 517 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 TACAAGGATGGCCCGCTGTTGAACTCGATAATATGCGATTAGTATTTAAGCTAAACAAGA 418 Query 518 ACAAGTTTCATTACATGGCGATTTCAGATGACAGGCAAAGGTACATGCCTTTGCCAGATG 577 | || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 419 AAAAATTTCATTACATGGCGATTTCAGATGACAGGCAAAGGTACATGCCTGTGCCAGATG 478 Query 578 ATCGGATTCCGCCTCGTGGTCAACCTCTTGCTTATCCTGAGGCAGTTCAACTTCTCGACC 637 ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||| Sbjct 479 ATCGGGTTCCGCCTCGTGGTCAGCCTCTTGCTTATCCCGAGGCAGTTCAACTTCTTGACC 538 Query 638 CTATTGAGCCCGAGTTTAAAGGAGAGGTGGATGACAAGTATGAATACTCAATGGAGAGTA 697 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 539 CTATCGAGCCCGAGTTTAAAGGAGAGGTGGATGACAAGTATGAGTACTCAATGGAGAGTA 598 Query 698 AAGACATAAAAGTTCATGGATGGATAAGTACAAATGATTCAGTTGGGTTTTGGCAAATCA 757 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 599 AAGACATAAAAGTTCATGGATGGATAAGCACAAATGATTCAGTTGGGTTCTGGCAAATCA 658 Query 758 CTCCAAGCAACGAGTTCCGATCTGCTGGCCCTCTCAAGCAATTCCTAGGCTCCCATGTCG 817 |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 659 CTCCAAGCAATGAGTTCCGTTCTGCTGGGCCTCTCAAGCAATTCCTAGGCTCCCATGTCG 718 Query 818 GTCCAACCAACCTTGCGATATTTCACAGTACTCACTATGTTGGAGCAGAACTAATCATGA 877 ||||||| ||||||||| |||||||||| |||||||||||||||||||| |||||||||| Sbjct 719 GTCCAACTAACCTTGCGGTATTTCACAGCACTCACTATGTTGGAGCAGACCTAATCATGA 778 Query 878 GTTTTAAAAACGGTGAAGCATGGAAGAAAGTGTTTGGACCTGTCTTTATTTATCTCAACT 937 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 779 GTTTTAAAAACGGTGAAGCATGGAAGAAAGTATTTGGACCTGTCTTCATTTATCTCAACT 838 Query 938 CTTTTCCTAAAGGAGTTGATCCTCTCTTGCTCTGGCATGAAGCCAAGAACCAGACAAAGA 997 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 CTTTTCCTAAAGGAGTTGATCCTCTCTTGCTCTGGCATGAAGCCAAGAACCAGACAAAGA 898 Query 998 TTGAAGAAGAGAAGTGGCCTTATAACTTCACCGCTTCAGATGATTTTCCTGCATCTGACC 1057 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TTGAAGAAGAAAAGTGGCCTTATAACTTCACCGCTTCAGATGATTTTCCTGCATCTGACC 958 Query 1058 AAAGAGGATCTGTTAGCGGTAGATTAGTCGTAAGAGACAGATTCATAAGTAGTGAGGATA 1117 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 959 AAAGAGGATCTGTTAGCGGTAGATTACTCGTAAGAGACAGATTCATAAGTAGTGAGGATA 1018 Query 1118 TACCTGCAAATGGTTCCTATGTGGGCTTGGCTGTACCAGGAGATGTTGGCTCATGGCAAA 1177 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1019 TACCTGCAAATGGTTCCTATGTGGGCTTGGCTGCACCAGGAGATGTTGGCTCATGGCAAA 1078 Query 1178 GAGAATGCAAAGGTTATCAATTCTGGTCTAAAGCAGACGAAAATGGATATTTTTCTATCA 1237 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1079 GAGAATGCAAAGGTTATCAATTCTGGTCTAAAGCAGACGAAAATGGATCTTTTTCTATCA 1138 Query 1238 ATAATGTGAGAAGTGGTCGTTATCATCTCTATGCATTTGCTCCGGGATTCATCGGTGATT 1297 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1139 ATAATGTGAGAAGTGGTCGTTATAATCTCTATGCATTTGCTCCGGGATTCATCGGTGATT 1198 Query 1298 ACCACAACGACACTGTTTTTGACATTTCTCCAGGCTCAAAGATTAGCCTAGGAGACTTGG 1357 ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1199 ACCACAACGACACCGTTTTTGACATTTCTCCAGGCTCAAAGATTAGCTTAGGAGACTTAG 1258 Query 1358 TGTATGAACCTCCTAGAGACGGTTCAACTCTATGGGAAATCGGTGTACCAGACCGAAGCG 1417 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 TGTATGAGCCTCCTAGAGACGGTTCAACTCTATGGGAAATCGGTGTACCAGACCGAAGCG 1318 Query 1418 CTGCAGAGTTCTACATTCCTGACCCGAATCCAAGCTTTGTAAACAAACTATACTTAAACC 1477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 CTGCAGAGTTCTACATTCCTGACCCGAATCCAAGCTTTGTAAACAAACTATACTTAAACC 1378 Query 1478 ATTCTGATAAAT-TCCGACAATATGGATTGTGGGAACGATATTCAGAATTGTACCCCGAT 1536 |||||||||||| || ||||||| |||||||||||||| ||||||||| ||||||||||| Sbjct 1379 ATTCTGATAAATATC-GACAATACGGATTGTGGGAACGCTATTCAGAACTGTACCCCGAT 1437 Query 1537 GAAGATATGGTCTACAATGTTGATGCTGATGATTACTCTAAGAAA-TGGTTCTTCATGCA 1595 |||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||||| Sbjct 1438 GAAGATATGGTCTACAATGTTGATATTGATGACTACTCTAA-AAACTGGTTCTTCATGCA 1496 Query 1596 AGTTACAAGGAAGCACGCAAATGGTGGATATAACGGTACAACATGGCAGATCAGATTTCA 1655 ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 1497 AGTTACAAGGAAGCAAGCAAATGGAGGATATAAAGGTACAACATGGCAGATCAGATTTCA 1556 Query 1656 ATTCGACGATAAAATGAAAAACTTAACCGGAAACTTCAAACTTCGAATCGCTCTAGCAAC 1715 ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| || Sbjct 1557 GTTCGACGATAAAATGAAAAACGTAACCGGAAACTTCAAACTGCGAATCGCTTTAGCCAC 1616 Query 1716 ATCAAATGTAGCAGAATTGCAGGTTCGGGTGAACGATCTTTCTGCAGATCCTCCATTGTT 1775 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1617 ATCAAACGTAGCAGAATTGCAGGTTCGGGTGAACGATCTTTCTGCAGACCCTCCATTGTT 1676 Query 1776 TACGACAGAGCAAATAGGAAGGGATAATACAATCGCAAGGCATGGTATTCATGGACTATA 1835 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 TAGGACAGAGCAAATAGGAAGGGATAATACAATCGCAAGGCATGGTATTCATGGACTATA 1736 Query 1836 TTGGTTATACAATGTGAATGTGCCTGCTGCTTCTCTTCACCTGGGAAATAACACCATATA 1895 ||||||||| | ||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 1737 TTGGTTATATAGTGTGAATGTTCCTGCTGCTTCTCTTCACGTGGGAAATAACACCATATA 1796 Query 1896 TCTAACTCAACCGCTCGCCACGAGTCCTTTTCAAGGACTCATGTATGATTATATTCGTCT 1955 |||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1797 TCTAACTCAAGCGCTCGCCACAAGCCCTTTTCAAGGACTCATGTATGATTATATTCGTCT 1856 Query 1956 TGAATATCCTGATTCCATCAATTATATTACTAAATCATAG 1995 |||||||||||||||||||||||||||||||| ||||||| Sbjct 1857 TGAATATCCTGATTCCATCAATTATATTACTAGATCATAG 1896 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98844873105 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5