BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910709
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09935.1 | Symbols: | Phosphoglycerate mutase family protei... 1138 0.0
> AT1G09935.1 | Symbols: | Phosphoglycerate mutase family protein
| chr1:3234060-3235530 REVERSE LENGTH=696
Length=696
Score = 1138 bits (616), Expect = 0.0
Identities = 672/699 (96%), Gaps = 3/699 (0%)
Strand=Plus/Plus
Query 13 ATGGATGCAAGATTCTTGTACCCCTTGGAGAGCTGTAAAATCATTCACTTGTTGAGACAT 72
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGATGCAAGATTCTTGTACCCCTTGGAGAGCTGTAAAATCATTCACTTGTTGCGACAT 60
Query 73 GGACAAGCGTTGCACAATGTAGAAGCCGAGAAGGATAGAAATGCGTTGTTGTCTCCTCAT 132
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 61 GGACAAGCGTTGCACAATGTAGAAGCTGAGAAAGATAGAAATGCGTTGTTGTCTCCTCAT 120
Query 133 CTTTTTGATGCCCCGCTTACCGATCATGGTCACCAACAGGTTGAGAATCTCCGCGAACGA 192
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTTTTGATGCTCCGCTTACCGATCATGGTCACCAACAGGTTGAGAATCTCCGCGAACGA 180
Query 193 GTTGTTTTAAGCGGGCTACTAAAGAGGGTTGAGCTAGTTGTAACTTCTCCGTTGTTTAGA 252
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTGTTTCAAGCGGGCTACTAAAGAGGGTTGAGCTAGTTGTAACTTCTCCGTTGTTTAGA 240
Query 253 ACTATGCAAACCGCAGTTGGAGTTTTTGGAAATGAATACGAACAACCGAGTATGACAAAT 312
|||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |
Sbjct 241 ACTATGCAAACCGCAGTTGGTGTTTTTGGAAATGAATACAAACAATCGAGTATGACAAGT 300
Query 313 AGCCCTCCCATTTTGGCACTTGAGGTCGCTCGAGACCGTAATGGAGTCCGTCCTCCTGAC 372
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 AGCCCTCCCATTTTGGCACTTGAGGTTGCTCGAGACCGTAATGGAGTCCGTCCTCCTGAC 360
Query 373 ATGAGAAGAAACATTAGCGAGTATCAAACTCTTTTCCCGACCATTGATTTCTCTCAGATT 432
|||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 361 ATGAGAAGAAACGTTAGCGAGTATCAAACTCTTTTCCCCACCATCGATTTCTCTCAGATT 420
Query 433 GAAAGTGAAGAGGACAACCTATGGAGACCGGATGTTAGAGAGTCCGAAGAAGAGATTTTG 492
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 421 GAAAGTGAAGAGGACAACCTATGGAGACCGGATGTTAGGGAGTCCGAAGAGGAGATTTTG 480
Query 493 GCAAGAGGGTTAGAGTTCATGAAATGGTTATGGAAGAGACCAGAGAAGGAGGTCGCAGTT 552
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 GCGAGAGGGTTAGAGTTCATGAAATGGTTATGGAAGAGGCCAGAGAAGGAGGTCGCAGTT 540
Query 553 GTTAGCCATGGAATAGTTTTGCAGCATATGTTGTATGTGTTCGCAAGCGATTGTGACGAG 612
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
Sbjct 541 GTTAGCCATGGAATAGTTTTGCAGCATATGTTGTATGTGTTTGCAAACGATTGTGACCTG 600
Query 613 TCAATTAGACATGAACTTTGCAAGAGGTTTGCTAATTGCGAAATTCGTACTGTCGTGATT 672
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 TCAATTAGACATGAACTTTGCAAGAGGTTTGCCAATTGCGAAATTCGTACTGTCGTGATT 660
Query 673 GTAGACAAAGGCATGATGAGTTCACCTACGGAGAATTGA 711
||||||||||||||| | |||| ||||||||||||||
Sbjct 661 GTAGACAAAGGCATG--GC-TTCATCTACGGAGAATTGA 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5