BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910714

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10120.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bin...   638    0.0  


> AT1G10120.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding 
superfamily protein | chr1:3304039-3306824 REVERSE LENGTH=2130
Length=2130

 Score =  638 bits (345),  Expect = 0.0
 Identities = 381/399 (95%), Gaps = 0/399 (0%)
 Strand=Plus/Plus

Query  1     AAAGCTGTGGAGGAATTTCAAGAAGACCCTCAAAGTGGAAGTGATCAGAGCCAGAAGAAG  60
             ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct  1315  AAAGCTGTGGAGGAATTTCAAGAAGACCCTCAAAGGGGAAATGATCAGAGCCAGAAGAAG  1374

Query  61    CACAAAAATGATCAGAGTAAAGAGACGATGAACAAGGAGAGCTCACAAAATGAAGAAGAA  120
             || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct  1375  CATAAAAATGATCAGAGTAAAGAGACGGTGAACAAGGAGAGCTCACAAAGTGAAGAAGCA  1434

Query  121   CCAAAAGAAAAGTACATTCATATGAGGGCAAGAAGAGGTCAAGCCACTAACAGTCACAGT  180
             || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1435  CCGAAAGAAAACTACATTCATATGAGGGCAAGAAGAGGTCAAGCCACTAATAGTCACAGT  1494

Query  181   CTTGCAGAGAGGGTTAGGAGAGAAAAGATCAGTGAAAGGATGAGATTGCTTCAAGAGCTT  240
             ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  1495  CTTGCAGAGCGGGTTAGAAGAGAAAAGATCAGTGAAAGGATGAGATTGCTTCAAGAACTT  1554

Query  241   GTTCCCGGATGCAACAAGATCACCGGAAAAGCGTTTATGCTTGATGAAATCATCAACTAT  300
             ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct  1555  GTTCCCGGATGCAACAAGATCACCGGAAAAGCGGTTATGCTCGATGAAATAATCAACTAT  1614

Query  301   ATTCAGTCATTGCAACAGCAAGTTGAGTTTTTGTCTATGAAACTTGCGACGGTGAATCCA  360
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1615  GTTCAGTCATTGCAACAGCAAGTTGAGTTTTTGTCTATGAAACTTGCGACGGTGAATCCA  1674

Query  361   GATATCAACATTGATATAGACAGGATTCTCGCCAAAGAT  399
             || ||||| ||||||||||||||||||||||||||||||
Sbjct  1675  GAGATCAATATTGATATAGACAGGATTCTCGCCAAAGAT  1713



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5