BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910727
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10060.2 | Symbols: ATBCAT-1, BCAT-1 | branched-chain amino ... 1851 0.0
> AT1G10060.2 | Symbols: ATBCAT-1, BCAT-1 | branched-chain amino
acid transaminase 1 | chr1:3284239-3287107 FORWARD LENGTH=1631
Length=1631
Score = 1851 bits (1002), Expect = 0.0
Identities = 1098/1145 (96%), Gaps = 4/1145 (0%)
Strand=Plus/Plus
Query 10 CGCTGCTTATCTCAATCTTCAACAACTTCATCTTATCTCTCTAAGATCTGGGGATTCCGT 69
||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 219 CGCTGCTTACCTCAATATTCAACAACTTCATCTTATCTCTCCAAGATCTGGGGATTTCGT 278
Query 70 ATGCATGGGACCAAAGCAGCAGCTTCTGTTGTAGAAGAACATGTCTCGGGGGCAGAACGT 129
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 ATGCATGGGACCAAGGCAGCAGCTTCTGTTGTAGAAGAACATGTCTCGGGGGCAGAACGT 338
Query 130 GAGGATGAAGAGTATGCTGATGTGGATTGGGACAAGCTTGGATTCAGTCTTATACGGACA 189
||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct 339 GAGGATGAAGAATATGCTGATGTAGATTGGGACAACCTTGGATTCAGTCTTGTACGGACA 398
Query 190 GATTACATGTTCGCCACCAGAAGTTGCAAAGACGGTAACTTCGAACAGGGTTACCTTAGC 249
|||| |||||||||||||| |||||||| |||||| ||||||||||||||||||||||||
Sbjct 399 GATTTCATGTTCGCCACCAAAAGTTGCAGAGACGGAAACTTCGAACAGGGTTACCTTAGC 458
Query 250 CGTTACGGCAACATCGAGCTCAACCCTGCTGCTGGAATTCTCAACTATGGCCAGGGACTA 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 CGTTACGGCAACATCGAGCTCAACCCTGCTGCTGGAATTCTCAACTATGGCCAGGGACTA 518
Query 310 ATAGAGGGGATGAAAGCGTACAGAGGAGAAGATGGTAGGATTCTTCTCTTCCGTCCAGAG 369
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 519 ATAGAGGGGATGAAAGCGTACAGAGGAGAAGACGGTAGGGTTCTTCTCTTCCGTCCAGAG 578
Query 370 CTAAACGCGATGCGCATGAAGATAGGAGCTGAGAGAATGTGTATGCATTCTCCTTCTGTT 429
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 CTAAACGCGATGCGTATGAAGATAGGAGCTGAGAGAATGTGTATGCATTCTCCTTCTGTT 638
Query 430 CATCAGTTTATTGAAGGTGTTAAGCAGACCGTTCTTGCAAACAGGCGTTGGGTTCCTCCT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 CATCAGTTTATTGAAGGTGTTAAGCAGACCGTTCTTGCAAACAGGCGTTGGGTTCCTCCT 698
Query 490 CCGGGCAAAGGATCGTTGTATCTTAGACCGTTGTTGTTTGGAACCGGAGCAAGCTTGGGT 549
||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 699 CCGGGCAAAGGCTCGTTGTATCTCAGACCGTTGTTGTTCGGAAGTGGAGCAAGCTTGGGT 758
Query 550 GTGGCTGCAGCACCAGAGTACACGTTTCTTGTGTTTGGCTCTCCTGTTCAAAACTACTTC 609
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GTGGCTGCAGCATCAGAGTACACGTTTCTTGTGTTTGGCTCTCCTGTTCAAAACTACTTC 818
Query 610 AAGGAAGGCACAGCGGCGTTGAACCTGTACGTGGAGAAGGTGATTCCACGCGCCTATCTT 669
||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 819 AAGGAAGGCACAGCGGCGTTGAACCTGTATGTGGAGGAGGTGATTCCACGCGCTTATCTT 878
Query 670 GGAGGAACTGGTGGTGTAAAGGCAATTTCCAATTACGGTCCAGTGCTTGAAGTGATGAGA 729
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 879 GGAGGAACTGGTGGTGTAAAGGCAATATCCAATTACGGTCCAGTGCTTGAAGTGATGAGA 938
Query 730 AGAGCAAAATCAAGAGGTTTTTCGGATGTTTTGTATCTTGATGCAGACACTGGGAAGAAC 789
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 939 AGAGCAAAATCAAGAGGGTTTTCGGATGTTTTGTATCTTGATGCAGATACTGGGAAGAAC 998
Query 790 ATAGAAGAAGTCTCTGCTGCTAATATATTCCTTGTGAAGGGGAGTACAATAGTGACTCCA 849
||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 999 ATAGAAGAAGTCTCTGCTGCTAATATATTCCTTGTGAAGGGCAATACAATAGTGACACCA 1058
Query 850 GCTACGAGCGGGACGATTCTCGG-GGGTATCACACGTAAGAGCGTCATCGAAATCGCCCT 908
||||||||||| ||||||||||| ||| ||||||||||||||| | ||||||||||||||
Sbjct 1059 GCTACGAGCGGAACGATTCTCGGAGGG-ATCACACGTAAGAGCATAATCGAAATCGCCCT 1117
Query 909 TGATCTTGGTTACAAGGTGGAAGAGCGAAGGGTTCCGGTAGAAGAACTGAAGGAAGCAGA 968
||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 1118 TGATCTTGGTTACAAAGTGGAAGAACGAAGTGTTCCGGTAGAAGAACTGAAGGAAGCTGA 1177
Query 969 AGAAGTTTTCTGCACTGGAACTGCTGCTGGAGTTGCTTCTGTTGGAAGCATCACTTATCA 1028
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 1178 AGAAGTTTTCTGCACTGGAACTGCCGCTGGAGTTGCTTCTGTTGGAAGCATCACTTTTAA 1237
Query 1029 GAACACAAGGACTGAGTACAAAGTTGGAGATGGGATTGTTACTCAGCAACTTCGATCTAT 1088
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1238 GAACACAAGGACTGAGTACAAAGTTGGAGATGGGATTGTTACACAGCAACTTCGATCTAT 1297
Query 1089 TCTTCTCGGAATACAAACTGGTTCTATCCAAGACAC-AAAGAATTGGGTTTTGCAGATTG 1147
|||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1298 TCTTGTCGGAATACAAACTGGTTCTATCCAAGACACTAAAGA-TTGGGTTTTGCAGATTG 1356
Query 1148 CCTAA 1152
|||||
Sbjct 1357 CCTAA 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5