BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910743

Length=762
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10220.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   479    2e-134


> AT1G10220.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: ZCF37 (TAIR:AT1G59590.1); Has 43 Blast hits to 43 proteins 
in 15 species: Archae - 0; Bacteria - 2; Metazoa - 7; 
Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 
(source: NCBI BLink). | chr1:3352159-3354690 FORWARD LENGTH=804
Length=804

 Score =  479 bits (259),  Expect = 2e-134
 Identities = 289/304 (95%), Gaps = 0/304 (0%)
 Strand=Plus/Plus

Query  1    ATGTTGAGTCCGTTTTCCTCACCGAGGAGATCGAGAAGAGGAAGCAAAGAAAACAAGAAC  60
            ||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |||||| 
Sbjct  1    ATGTTGAGTCCGTTTTCGTCACCTAGGAGATCGAGAAGAGGAAACAAAGAAAGCAAGAAT  60

Query  61   CCTTATTCAAATCAAGGACTTGACAAGTTCTCTGCACTTCTATCTGAGCTTGATGAGAAA  120
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  61   CCTTATTCAAATCAAGGACTTGACAAGTTCTCTGCACTTCTATCTGAGCTCGATGAGAAA  120

Query  121  AGACAGAGCATTTACGCAAAGAGGCTTGATCCTGATGGACCACCTCTTGTTCGGTTTGTC  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  AGACAGAGCATTTACGCAAAGAGGCTTGATCCTGATGGACCGCCTCTTGTTCGGTTTGTC  180

Query  181  TTTACTAGCTCCGGTGAGTGCGTCCCTGTCATGATCAAGACAAAGAAGGCAGGTCAGAAG  240
            || ||||||||||| |||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct  181  TTCACTAGCTCCGGCGAGTGCGTCCCTGTAATGATCAAGACAAAGAGGGCAAGTCAGAAG  240

Query  241  AAGGATGTTCAAGATGATTTCAAGGTCAAGAAGAAGGATGTTCTAGATGATTTCAAGTTC  300
            |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct  241  AAGGATGTTCTAGATGATTTCAAGGTCAAGAAGAAGGACGTTCTAGATGATTTCAAGGTC  300

Query  301  AAGA  304
            ||||
Sbjct  301  AAGA  304


 Score = 63.9 bits (34),  Expect = 2e-09
 Identities = 41/44 (93%), Gaps = 2/44 (5%)
 Strand=Plus/Plus

Query  261  CAAGGTCAAGAAGAAGGATGTTCTAGATGATTTCAAGTTCAAGA  304
            ||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct  230  CAA-GTC-AGAAGAAGGATGTTCTAGATGATTTCAAGGTCAAGA  271



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37022566339


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5