BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910750
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10280.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2100 0.0
> AT1G10280.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:3366493-3369095
REVERSE LENGTH=1897
Length=1897
Score = 2100 bits (1137), Expect = 0.0
Identities = 1205/1239 (97%), Gaps = 0/1239 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAGAGGAGGGAAAGAGGAAGGAGAAAAACACATAGGGTTACTAAAGCTGGCTCAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 357 ATGGCGAGAGGAGGGAAAGAGGAAGGAGAAAAACACATAGGGTTACTAAAGCTGGCGCAA 416
Query 61 ACGCTGTCGTTTTTGCTAATATTCATGGCCGGAATCATCATCGGCCTCGCCGCTAGTTCT 120
|||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct 417 ACGCTGTCGTTTTTGCTAATTTTCATGGCTGGAATCATCATCGGTCTCGCCGCAAGTTCT 476
Query 121 CACATCGATCGCTACTTCAATTCTTTGCCGAGGATGTTCTCATCAACCACTAATCTCCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 477 CACATCGATCGCTACTTCAATTCTTTGCCGAGGATGTTCTCATCAACCACTAACCTCCAA 536
Query 181 TCGATTCCGTTTTCGACTCCTGATTACTCCAATTGCACAATCATCCACCGGGATTGCACA 240
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 537 TCGATTCCTTTTTCGACTCCTGATTACTCCAATTGCACAATCATCCACCGAGACTGCACA 596
Query 241 GGTAACGACGAGAACGAGAGCGACGAAGGAGGAGTCAAGGCGGAGAAACCAAAGGATCGA 300
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 597 GGTAACGACGACAACGAGAGCGACGACGGAGGAGTCAAGGCGGAGAAACCAAAGGTTCGA 656
Query 301 GATTGTTGGAGCATTGATGGGTTTGTTCGGCCAGAGAATCTGAGTCATGGAATGAGTGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 657 GATTGTTGGAGCATTGATGGGTTTGTTCGGCCAGAGAATCTGAGTCATGGAATGACTGAT 716
Query 361 GATGAGTTGTTCTGGAGAGCTTCGATGGTTCCGGTGAAGGAAGAGTATCCGTATGATAGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 717 GATGAGTTGTTCTGGAGAGCTTCGATGGTTCCGGTGAAGGAAGAGTATCCGTACGATAGG 776
Query 421 GTTCCGAAAGTGGCGTTTATGTTTCTCACGAGAGGGCCTTTACCTATGCTTCCGCTTTGG 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 GTTCCGAAAGTGGCGTTTATGTTTCTGACGAGAGGGCCTTTACCTATGCTTCCGCTTTGG 836
Query 481 GAGAAGTTTTTTAAAGGCAATGGCAAGTACTTATCGGTTTATGTTCATACGCCTCCTGGA 540
|||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 837 GAGAAGTTTTTTAAAGGCAATGAAAAGTACTTGTCCGTTTATGTTCATACGCCTCCTGGA 896
Query 541 TACGACATGAATGTCTCTCGTGATTCTCCGTTTTACGACCGGCAGATCCCGAGCCAGAGA 600
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 897 TACGACATGAATGTCTCTCGTGATTCTCCCTTTTACGACCGCCAGATCCCCAGCCAGAGA 956
Query 601 GTTGAATGGGGATCCCCACTATTGACAGATGCAGAGAAGCGTCTTCTAGCCAACGCATTG 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 957 GTTGAATGGGGATCCCCACTATTGACAGACGCAGAGAAGCGTCTTCTAGCCAATGCATTG 1016
Query 661 CTGGACTTCTCAAATGAGCGTTTTGTTCTTCTCTCAGAGAGCTGTGTCCCAGTTTACAAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CTGGACTTCTCAAATGAGCGTTTTGTTCTTCTCTCAGAGAGCTGTGTCCCAGTTTACAAC 1076
Query 721 TTCTCCACTGTCTACACTTACCTAATAAACTCTGCTTACAGTTTTGTGGACTCTTATGAT 780
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTCTCAACTGTCTACACTTACCTAATAAACTCTGCTTACAGTTTTGTGGACTCTTATGAT 1136
Query 781 GAGCCAACACGTTATGGCCGCGGCCGTTACAGCCGCAAGATGCTCCCGGATATCAAACTC 840
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1137 GAGCCAACACGTTATGGCCGTGGCCGTTATAGCCGCAAGATGCTCCCGGATATCAAACTC 1196
Query 841 CATCACTGGCGCAAAGGGTCTCAGTGGTTTGAAGTAAACCGTAAAATCGCCATCTACATC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CATCACTGGCGCAAAGGGTCTCAGTGGTTTGAAGTAAACCGTAAAATCGCCATCTACATC 1256
Query 901 ATCTCAGACTCGAAATACTACTCATTGTTCAAACAATTCTGCAGACCAGCTTGTTACCCG 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ATCTCAGACTCGAAATACTACTCATTGTTCAAACAATTCTGCAGACCAGCTTGTTACCCA 1316
Query 961 GACGAGCATTACATCCCCACTTTCTTGAACATGTTTCACGGCTCAATGAACGCAAATAGA 1020
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1317 GACGAGCATTACATCCCTACTTTCTTGAACATGTTTCACGGTTCAATGAACGCAAATAGA 1376
Query 1021 AGCGTGACATGGGTTGATTGGTCCATAGGCGGTCCGCATCCAGCTACATATGCTGCAGTT 1080
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1377 AGCGTGACATGGGTTGATTGGTCCATAGGCGGTCCCCATCCAGCTACATATGCTGCAGCT 1436
Query 1081 AATATCACAGAAGGGTTTCTCCAATCTATAAGGAAAAACGAGACGGATTGTCTCTACAAT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1437 AATATCACAGAAGGGTTTCTCCAATCTATAAGGAAAAACGAGACGGATTGTCTTTACAAT 1496
Query 1141 GAAGAGCCAACTTCGTTATGCTTCCTTTTTGCTCGGAAGTTCTCTCCTTCTGCCTTAGCT 1200
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1497 GAAGAGCCAACTTCGTTATGCTTCCTTTTTGCTCGCAAGTTCTCTCCTTCTGCCTTAGCT 1556
Query 1201 CCTCTTATGAATTTGAGCTCTACTGTCCTGGGGTTTTGA 1239
|||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CCTCTTATGAATTTGAGCTCTACTGTCCTGGGGTTTTGA 1595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5