BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910770

Length=1116
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10419.1 | Symbols:  | Pseudogene of AT1G10419 | chr1:342803...   383    2e-105


> AT1G10419.1 | Symbols:  | Pseudogene of AT1G10419 | chr1:3428031-3428425 
FORWARD LENGTH=395
Length=395

 Score =  383 bits (207),  Expect = 2e-105
 Identities = 251/272 (92%), Gaps = 4/272 (1%)
 Strand=Plus/Plus

Query  847   ATAGTTCAAGAGATTCACAGGCATGAGGCGGATAGTAGCAATGCAGATCAACTGGAGATA  906
             ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct  4     ATAGTTCAAGAGATTCACATGCATAAGGCGGATAGTAGCAATGCAGATCAACTGGAGATA  63

Query  907   GCGAATGAGCTCACACCAGAAGAAGCGAGAAGCTATGCGATATCCCAATTGCCTCGGGAA  966
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  64    ACGAATGAGCTCACACCAGAAGAAGCGAGAAGCTATGCGATATCCCAATTGCCTCGGGAA  123

Query  967   ATCTCAAAGCACACTGGTTTTGCCTTTGACTCACCTGGCTATGAGTCGTTCTTTGCATCT  1026
             ||||||||||||| | |||||||||| ||||||||||| |||||  |||||||||| |||
Sbjct  124   ATCTCAAAGCACATTCGTTTTGCCTTCGACTCACCTGGTTATGAACCGTTCTTTGCTTCT  183

Query  1027  CAATTGGGGTTT-TACGCTCCACAGAAAGTGTGGGATGTGGCTAGGAGAGCTAGCATGAG  1085
             ||| |||| | | ||||| |||||||||| ||||||||||||||| ||||| ||||||||
Sbjct  184   CAACTGGG-TATATACGCACCACAGAAAGCGTGGGATGTGGCTAGAAGAGCCAGCATGAG  242

Query  1086  GTCACG-GCCCAAAGCACCAAAGAAGAATTGA  1116
             |||||| ||| |||||| ||||||||||||||
Sbjct  243   GTCACGAGCC-AAAGCATCAAAGAAGAATTGA  273



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 54718594050


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5