BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910776

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53645.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   174    2e-43


> AT1G53645.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr1:20026147-20028635 REVERSE LENGTH=1907
Length=1907

 Score =  174 bits (94),  Expect = 2e-43
 Identities = 119/131 (91%), Gaps = 2/131 (2%)
 Strand=Plus/Plus

Query  9    CAAGGAT-GAAGCTCCTAAGCCTCAATTGAGTATGGAAGAGGCTGGAAGAAGAGCAAGGA  67
            ||| ||| ||| |||||||||| |||||||||  ||||||||||||||||||||||||||
Sbjct  825  CAAAGATGGAA-CTCCTAAGCCGCAATTGAGTGCGGAAGAGGCTGGAAGAAGAGCAAGGA  883

Query  68   GCAAGCTTTCGCGTGGTGAAGCTGAAGGAAGTGGTGTgagaggaagaggagggagaggga  127
            |  ||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||
Sbjct  884  GTGAGCTTTCGCGTGGTGAAGCTGAAGGAAGCAGTGTGGGAGGAAGAGGAGGGAGAGGGA  943

Query  128  gaggaagagga  138
            |||| ||||||
Sbjct  944  GAGGGAGAGGA  954



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7595504001


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5