BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910785
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10540.1 | Symbols: ATNAT8, NAT8 | nucleobase-ascorbate tran... 2532 0.0
> AT1G10540.1 | Symbols: ATNAT8, NAT8 | nucleobase-ascorbate transporter
8 | chr1:3474864-3477927 REVERSE LENGTH=1951
Length=1951
Score = 2532 bits (1371), Expect = 0.0
Identities = 1538/1621 (95%), Gaps = 2/1621 (0%)
Strand=Plus/Plus
Query 1 ATGGTAGGTGATGGCGGAGGAAATCCAGAGCCACCGCAGAAGCAGGAAGATCTTCAGCCT 60
|||| ||||||||||| || |||| || ||||||||||||| ||||||||||||||||||
Sbjct 172 ATGGCAGGTGATGGCGTAGAAAATGCAAAGCCACCGCAGAAACAGGAAGATCTTCAGCCT 231
Query 61 CATCCGGTAAAGGATCAACTTTACTCTATCACTTATTGCCTCACAAGTCCTCCTCCTTGG 120
|||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 232 CATCCGGTGAAGGATCAACTTTACGGTATCACTTACTGCCTCACAAGTCCTCCTCCTTGG 291
Query 121 CCTGAGACAATACTTCTGGGGTTTCAACACTACTTGGTGATGCTTGGAACTACTGTTCTC 180
|| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 292 CCGGAGACAATACTTCTGGGGTTTCAACACTACTTAGTGATGCTTGGAACAACTGTTCTC 351
Query 181 ATTCCAACTATGTTAGTTTCAAAGATTGATGCAAGAAACGAAGATAAGGTAAAGTTGATT 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ATTCCAACAATGTTAGTTTCAAAGATTGATGCAAGAAACGAAGATAAGGTAAAGTTGATT 411
Query 241 CAGACATTGCTCTTTGTGTCTGGAATCAACACGTTATTACAAAGCTTCCTTGGGACTCGT 300
||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 412 CAGACGTTGCTCTTTGTGTCTGGAATCAACACGTTATTTCAAAGCTTCTTTGGGACTCGT 471
Query 301 CTTCCTGCTGTCATTGGAGCTTCTTACACCTATGTGCCAACCACAATGTCAATCGTTTTA 360
||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| |||
Sbjct 472 CTTCCTGCTGTCATTGGAGCTTCTTACTCTTATGTGCCAACTACAATGTCAATCGTCTTA 531
Query 361 GCTGCTCGTTACAATGACATTATGGATCCTCAAGAGAAATTTGAACAGATCATGCGTGGA 420
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 532 GCTGCTCGTTACAATGACATTATGGATCCTCAAAAGAGATTTGAACAGATCATGCGTGGA 591
Query 421 ATCCAAGGTGCTCTTATTATTGCCTCACTACTTCAGATCCTTGTAGGTTTCAGCGGCCTT 480
||||||||||||||||||||||||||| | ||||| |||||||| |||||||| ||||||
Sbjct 592 ATCCAAGGTGCTCTTATTATTGCCTCATTTCTTCATATCCTTGTTGGTTTCAGTGGCCTT 651
Query 481 TGGCGCAATG-TAGCTAGGTTTTTGAGTCCCTTATCTGCGGTTCCTCTTGTGGCATTTTC 539
|||||||||| || ||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 652 TGGCGCAATGTTA-CTAGGTTTTTGAGTCCCTTATCTGCAGTTCCTCTTGTAGCCTTTTC 710
Query 540 TGGCTTTGGACTCTATGAACAAGGATTCCCTATGCTAGCAAAATGCATTGAGATTGGACT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TGGCTTTGGACTCTATGAACAAGGATTCCCTATGCTAGCAAAATGCATTGAGATTGGACT 770
Query 600 GCCTGAGATCATACTTCTTGTCATATTCTCACAGTACATTCCTCATCTGATGCAAGGAGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GCCTGAGATCATACTTCTTGTCATATTCTCACAGTACATTCCTCATCTGATGCAAGGAGA 830
Query 660 AACATATTCTAACTTCTTCCACCGGTTTGCTGTGATAATCTCAGTGGTGATTGTATGGCT 719
||||| |||||||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 831 AACATGTTCTAACTTCTTCCACCGATTTGCTGTGATATTCTCAGTGGTGATTGTGTGGCT 890
Query 720 TTATGCATACATTCTCACCATTGGTGGGGCCTATAGTGACACAGGAATCAATACTCAAAT 779
||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||
Sbjct 891 TTATGCATACATTCTAACCATTGGTGGGGCTTATAGTAACACAGAAATCAATACTCAAAT 950
Query 780 CAGTTGCAGAACTGATCGCGCTGGTATCATTAGCGCCGCTCCATGGATTAGAGTGCCTTA 839
|||||||||||| || || ||||| ||||||||||| |||||||||||||||||||| |
Sbjct 951 CAGTTGCAGAACCGACCGTGCTGGCATCATTAGCGCTTCTCCATGGATTAGAGTGCCTCA 1010
Query 840 CCCTCTTCAATGGGGAGGACCTCCAACTTTTAATGCAGGGGAAATTTTTGCTATGATTGC 899
|||| |||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||
Sbjct 1011 CCCTATTCAATGGGGAGGAGCTCCAACTTTCAATGCAGGGGATATTTTTGCTATGATGGC 1070
Query 900 TGCTTCTTTCGTTTCTCTCGTTGAGTCTACAGGGACATACATTGCTGTATCGAGATATGC 959
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TGCTTCTTTCGTTTCTCTTGTCGAGTCTACAGGGACATACATTGCTGTATCGAGATATGC 1130
Query 960 AAGTGCAACGCCAATCCCACCTTCTGTGCTTGGCCGTGGAATCGGTTGGCAGGGATTTGG 1019
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1131 AAGTGCAACACCAATCCCACCTTCTGTGCTTAGTCGTGGAATCGGTTGGCAGGGATTTGG 1190
Query 1020 AATTCTTCTCTGTGGATTATTTGGAGCAGGAAATGCAACATCTGTGTCTGTGGAGAATGC 1079
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1191 AATTCTTCTCTGTGGATTATTTGGAGCAGGAAATGCAACATCCGTGTCTGTAGAGAATGC 1250
Query 1080 CGGTTTGTTGGCTGTAACGCGCGTTGGTAGTAGAAGAGTAATTCAAGTATCAGCCGGATT 1139
||| |||||||||||||| ||||||||||||||| | |||||||||||| |||| |||||
Sbjct 1251 CGGCTTGTTGGCTGTAACACGCGTTGGTAGTAGACGTGTAATTCAAGTAGCAGCTGGATT 1310
Query 1140 CATGATCTTCTTCTCCATTCTTGGTAAATTTGGGGCCATATTTGCTTCGATTCCAGCTCC 1199
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1311 CATGATCTTCTTCTCCATTCTTGGTAAATTTGGGGCTATCTTTGCTTCGATTCCAGCTCC 1370
Query 1200 TATCATCGCAGCTCTTTACTGTTTGTTCTTCTCATACGTTGGTGCGGGTGGTCTAAGTCT 1259
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1371 TATCGTCGCAGCTCTTTACTGTTTGTTCTTCTCATACGTTGGTGCTGGTGGTCTAAGTCT 1430
Query 1260 AATCCAGTTCTGCAATCTGAACAGTTTCAGAACTAAGTTCATTCTTGGATTCTCCATCTT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 AATCCAGTTCTGCAATCTGAACAGTTTCAGAACTAAGTTCATTCTTGGATTCTCCATCTT 1490
Query 1320 CATGGGCTTATCAATACCTCAATACTTCTACCAGTACACAACTTTTGAAAATTATGGACC 1379
|||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct 1491 CATGGGCTTATCCATACCTCAATACTTTTACCAGTACACAACTTTGGAAACCTATGGACC 1550
Query 1380 CGTTCGAACATCCGCAACATCTTTCAACAACATTATAAACGTTCCTTTCTCATCTAAAGC 1439
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1551 CGTTCGGACATCCGCAACATGGTTCAACAACATTATAAACGTTCCTTTCTCATCTAAAGC 1610
Query 1440 ATTTGTTTCCGGGATTTTGGCCTTCTTTCTAGATATGACATTGCCTCCAAAGGACAAGGC 1499
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
Sbjct 1611 ATTTGTTTCCGGGATTTTGGCCTTCTTTCTAGACACGACATTGCCTCCAAAGGACAAGAC 1670
Query 1500 GACAAAGAAAGATCGAGGACTAGTATGGTGGAAGCGATTTAAATCGTTCAAATCTGATAA 1559
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1671 GACAAAGAAAGATCGAGGACTAGTTTGGTGGAAGCGATTTAAATCGTTCCAATCTGATAA 1730
Query 1560 CAGAAGCGAAGAGTTCTACTCTTTGCCTCTCAATCTCAGCAAGTACTTTCCTTCTCACTG 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 CAGAAGCGAAGAGTTCTACTCTTTGCCTCTCAATCTCAGCAAGTACTTTCCTTCTCACTG 1790
Query 1620 A 1620
|
Sbjct 1791 A 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5