BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910794

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10590.3 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   689    0.0  


> AT1G10590.3 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr1:3502009-3503415 REVERSE LENGTH=835
Length=835

 Score =  689 bits (373),  Expect = 0.0
 Identities = 427/453 (94%), Gaps = 3/453 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTAATTTTTGTACCGTTGTTATAAAAATGGCTGAGGCAACGCCTGCTTTGAGGAAG  60
            ||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||
Sbjct  71   ATGGCTAATTTTTGTAGGGTTGTTATAAAAATGGCTGAGGCAACGTCTGCTTTGAGGAAG  130

Query  61   CCTGTGTTCACCAAGGTTAATGAGCTGAGACCAGGAACCAGTGGTCACTCGCTGAATGTG  120
            ||||||||||| |||||||||||| ||||||||||||||| ||| ||||| |||||||||
Sbjct  131  CCTGTGTTCACAAAGGTTAATGAGTTGAGACCAGGAACCAATGGCCACTCTCTGAATGTG  190

Query  121  AAAGTTGTCAACACGAAGATGGTGTTGCAGAGAGGAGGAGGAGGTCGTCCCATGGGTCCT  180
            |||||||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||
Sbjct  191  AAAGTTGTCAACACGAAGATGGTGATGC--AGA-GAGGAGGAGGTCGTCCCATGGGTCCT  247

Query  181  CAGGCACGTCAGATGCGAATTGCGGAATGTTTAGTTGGTGACGAGACTGGAATCATAATC  240
            ||| ||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct  248  CAGTCACGTCAGATGCGGATTGCCGAATGCTTAGTTGGTGATGAGACTGGAATCATAATC  307

Query  241  TTTACTGCAAGAAATGACCAAGTGGATTTGATGAAAGAGGGCAGTGTATTGACTCTGCGC  300
            ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| 
Sbjct  308  TTTACTGCAAGAAATGACCAAGTGGATATGATGAAAGAAGGCAGTGTAGTGACTCTGCGT  367

Query  301  AATGCGAAGATCGACATGTACAAGGGGTCTATGAGGCTTGCAGTTGATAGATGGGGACGT  360
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  368  AATGCGAAGATCGACATGTACAAGGGTTCTATGAGGCTTGCAGTTGATAGATGGGGACGT  427

Query  361  GTTGACGTCGCAGAGGAGCCCACAGACATCACCGTGAAGGATGATAACAATCTTTCGCTA  420
            ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  428  GTTGAAGTTGCAGAGGAGCCCACAGACATCACCGTGAAGGATGATAACAATCTTTCGCTG  487

Query  421  ATCGAGTATGAGCTTGTGAGCGTCGAAGCTTGA  453
            ||||||||||||||||||||||||||| |||||
Sbjct  488  ATCGAGTATGAGCTTGTGAGCGTCGAAACTTGA  520



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5