BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910807

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G07020.2 | Symbols:  | UDP-Glycosyltransferase superfamily p...   244    4e-64
  AT1G10705.1 | Symbols:  | Encodes a Maternally expressed gene (...   167    9e-41


> AT3G07020.2 | Symbols:  | UDP-Glycosyltransferase superfamily 
protein | chr3:2217653-2221702 REVERSE LENGTH=2493
Length=2493

 Score =  244 bits (132),  Expect = 4e-64
 Identities = 150/159 (94%), Gaps = 0/159 (0%)
 Strand=Plus/Plus

Query  102  ttcttcttcttcttcatcttcttcCTCAAGTTCCGGCCGAGCGTCGGTGAAAATCGAGGA  161
            ||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct  151  TTCCTCGTCTTCTTCTTCTTCTTCCTCAAGTTCCGGCAGAGCGTCGGTGAAAATCGAAGA  210

Query  162  GATTGAAAGCGGTGCTGCTGGTAGTGGCGTCGTCATTGGCTCTGAAGAACTTGAGACCAA  221
            ||||||| |||||||||||| |||||||||||||||||  ||||||||||||||||||||
Sbjct  211  GATTGAAGGCGGTGCTGCTGCTAGTGGCGTCGTCATTGTTTCTGAAGAACTTGAGACCAA  270

Query  222  TCCCAAAACTGTTGTTGCCTCCATTGCTGATGAAACTGT  260
            |||||||||||||||||||||||||||||||||||||||
Sbjct  271  TCCCAAAACTGTTGTTGCCTCCATTGCTGATGAAACTGT  309


 Score =  239 bits (129),  Expect = 2e-62
 Identities = 149/159 (94%), Gaps = 0/159 (0%)
 Strand=Plus/Plus

Query  264  AGATGGTATCCCCCAACCTATTGTTGTTGACCGTGAAGAATCGAAAAACGGTGTTTGCGC  323
            ||||| |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct  586  AGATGCTATCCCTCAACCTATTGTTGTTGATCGTGGAGAATCGAAAAACGGTGTTTGCGC  645

Query  324  TGATGAGTCTATTGATGGGGTTGACCTTCAGTATATCCCTCCTACGCAAATTGTGATGCT  383
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct  646  TGATGAGTCTATTGATGGGGTTGACCTTCAGTATATCCCTCCTATGCAAATTGTGATGTT  705

Query  384  AATTCTCGGAACACGTGGAGATGTTCCACCTTTGGTTGC  422
            |||| | ||||||||||||||||||| |||||| |||||
Sbjct  706  AATTGTTGGAACACGTGGAGATGTTCAACCTTTTGTTGC  744


> AT1G10705.1 | Symbols:  | Encodes a Maternally expressed gene 
(MEG) family protein [pseudogene] | chr1:3557114-3557457 FORWARD 
LENGTH=242
Length=242

 Score =  167 bits (90),  Expect = 9e-41
 Identities = 96/99 (97%), Gaps = 0/99 (0%)
 Strand=Plus/Plus

Query  4    CTTTGGTACCTCATTGTTGGTGCTGCGAACATTTACGGGGTATCAGGCCGCAATGCTGTT  63
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  133  CTTTGGTACCTCATTGTTGGTGCTGCGAACATTTACGTGGTATCAGGCCGCAATGCTGTT  192

Query  64   GGTCAGGCAACACTGGTCGCGACTATTGCAACCAGCAAt  102
            |||||||||  ||||||||||||||||||||||||||||
Sbjct  193  GGTCAGGCAGTACTGGTCGCGACTATTGCAACCAGCAAT  231



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20207635098


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5