BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910821
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10747.1 | Symbols: | Maternally expressed gene (MEG) famil... 292 8e-79
> AT1G10747.1 | Symbols: | Maternally expressed gene (MEG) family
protein | chr1:3574312-3574830 FORWARD LENGTH=446
Length=446
Score = 292 bits (158), Expect = 8e-79
Identities = 221/249 (89%), Gaps = 14/249 (6%)
Strand=Plus/Plus
Query 1 ATGAAATCATCATTGCGTACATCTCTCATCTGCATACTCATGCTCTCTCTCTTTGCTCTA 60
|||||||||||| | |||||||||||| ||||||||||||||||||||| | ||||||
Sbjct 1 ATGAAATCATCA---CATACATCTCTCATATGCATACTCATGCTCTCTCTCGTCGCTCTA 57
Query 61 CATCAATGTGTGAGGATGACGGTAAGAGAGATAGGAAGGTCGAACAAAATCTATATTCCT 120
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 58 CATCAATGTGTGAGGATGAAGGTAAAAGAGATAGGAAGGTCGAACAAAATCTATATACCT 117
Query 121 CCATGTGACCATGTTTCCATGACAGCTCATGCGACCATGTTTTCAAAAGAGACTGTTATT 180
|||||| | | || |||||||| ||||||||||||| |||| |||||||||||
Sbjct 118 CCATGT-----T-T--CCGTGACAGCT---GCGACCATGTTTTAAAAAAAGACTGTTATT 166
Query 181 GCTGCGGGACAAAACCAGATCTTTGCTGGGATGATCAACACTATTGCAACACCCATTGTC 240
|||||||| |||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 167 GCTGCGGGTCAAAGCCAGATCTTTGCTGGGAAGACCAACACTATTGCAACACCCATTGTC 226
Query 241 CTCCTCTAA 249
|||||||||
Sbjct 227 CTCCTCTAA 235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11310243525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5