BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910830
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10820.2 | Symbols: | Protein of unknown function (DUF3755)... 1144 0.0
> AT1G10820.2 | Symbols: | Protein of unknown function (DUF3755)
| chr1:3600910-3605024 REVERSE LENGTH=1573
Length=1573
Score = 1144 bits (619), Expect = 0.0
Identities = 743/798 (93%), Gaps = 27/798 (3%)
Strand=Plus/Plus
Query 1 ATGATTCCAATGGATAATCACTGCTTGCCAAGTACTAGCACCTCCGGTCTTGTATTCCCT 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 270 ATGATTCCAATGGATAATCACTGCTTGCCAAGTACTAGCACCACCGGTCTTGTATTCCCG 329
Query 61 ACCAATTACGGTGTCAATGGGATAAACACTACTTCCGGGTTTCACCCAGCTGTGGATTCT 120
|||||||||||||| |||| ||| ||| || | ||||| |||||||||||||||||| ||
Sbjct 330 ACCAATTACGGTGTTAATGCGATTAACGCTTCCTCCGGTTTTCACCCAGCTGTGGATGCT 389
Query 121 TCGGGTTCGGTGGCTGCAAGAGTCAAACAAGAAGCTGCTTTGGTTATGGATTGGTCCGTT 180
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TCGGGTTCAGTGGCTGCAGGAGTCAAACAAGAAGCTGCTTTGGTTATGGATTGGTCCGTT 449
Query 181 GAGGAACAGTATGTGTTGGAGAACGGCCTTGCAAAATTAAAAGATGAACCCAAAATTTCA 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 GAGGAACAGTATGTTTTGGAGAACGGCCTTGCAAAATTAAAAGATGAACCCAAAATTTCA 509
Query 241 AAGTATGTAAAGATCGCTGCAACTCTACCGGATAAAACTGTAAGGGATGTAGCATTGAGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 AAGTATGTAAAGATCGCTGCAACTCTACCGGATAAAACTGTAAGGGATGTAGCATTGAGG 569
Query 301 TGTAGATGGATGACGAGAAAACGGAGGAAAAGAGAAGATAATAATGCCGCTAAGAACATT 360
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
Sbjct 570 TGTAGATGGATGACGAGAAAACGGAGGAAACGAGAGGATAATAATGCCGCTAAGAACA-T 628
Query 361 AGCAATAGGAAGACCATGCTTCTTCATGGTAAGGTGGTGGATACATCCCCAGAACTGAAC 420
| || || | | | || ||||||||||||||||||||||||||||||
Sbjct 629 -----T----AG--CA-----C-T-A-GG-AAGGTGGTGGATACATCCCCAGAACTGAAC 668
Query 421 ATGCTATCCAATGTGCCACAACAAAATGCTTTATATGTCATGAACAATATGTGCCACAGT 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 669 ATGCTATCCAATGTGCCACAACAAAATGCTTTATATGTCCTGAACAATATGTGCCACAGT 728
Query 481 ACACGCATGCCTTTTGAAGGTTTAAGTGACACAGTAATGGATCTTCTACAGCAAAATGCT 540
||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 729 ACACGCACGCCTTTCGAAGGTTTAAGTGACGCAGTAATGGATCTTCTACAGCAAAATGCT 788
Query 541 CAAGCTTTTAGTCAGATTTCTTACAACCTCTCTGCGTGCAAG--G-A---TAACATCAGT 594
|||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 789 CAAGCTTTTAGTCAGATTTCTTACAACCTCTCTGCGTGCAAGCTGCAGGATAACATCAGT 848
Query 595 CTCTTTTATCAGGCAAGAAACAATATCAGCGCCATTCTGACTGATATGAAGGAGATGCCT 654
|||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 849 CTCTTTCATCAGGCAAGAAACAATATCAGCGCCATTTTGACTGACATGAAGGAGATGCCT 908
Query 655 GGTATCATGAGTCGAATGCCGGCTCTACCAGTTTCAATTAATGATGATCTTGCAAGCAAT 714
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 909 GGAATCATGAGTCGGATGCCGGCTCTACCGGTTTCAATTAATGATGATCTTGCAAGCAAT 968
Query 715 TTATTGTCGAGTACAACACAGCCAATATCGTACAACATTCCACCAAGCATCCACCTGAAG 774
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 CTATTGTCGAGTACAACACAGCCAATATCGTACAACATTCCACCAAGCATCCACCTGAAG 1028
Query 775 CAAGAGCCGAGAATTTGA 792
|||||||| |||| ||||
Sbjct 1029 CAAGAGCCAAGAAGTTGA 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5