BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910850
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11040.1 | Symbols: | HSP40/DnaJ peptide-binding protein | ... 2034 0.0
> AT1G11040.1 | Symbols: | HSP40/DnaJ peptide-binding protein
| chr1:3679225-3680924 REVERSE LENGTH=1317
Length=1317
Score = 2034 bits (1101), Expect = 0.0
Identities = 1245/1317 (95%), Gaps = 0/1317 (0%)
Strand=Plus/Plus
Query 1 ATGGGGACTCCTCGTTCGCCGGCGACAGATTTCTTCGGAATTTCCAAGACAGCATGCAAA 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGGACTCCTCGTTCGCCGGCTACAGATTTCTTTGGAATTTCCAAGACAGCATGCAAA 60
Query 61 GCCTACAAGTCCCTCGTCACCAAATTGCACCCTCTTTCTTCTCATCGCAAATCCGAATCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCTACAAGTCCCTCGTCACCAAATTGCACCCTCTTTCTTCTCATCGCAAATCCGAATCC 120
Query 121 CATTCCGACGCCGATTCCGCAATTCACCGGAGGTATCTAGAGGAGAAATTTGCGGAGGAG 180
|||||||| |||||||||||||| |||||||| ||| | |||||||||||||||||||||
Sbjct 121 CATTCCGATGCCGATTCCGCAATCCACCGGAGATATTTGGAGGAGAAATTTGCGGAGGAG 180
Query 181 GATGATCTCATTGCTGCTCGGAGAGGTCTCCGGCTACAGAGCATGGACGATAGCACCGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 181 GATGATCTCATTGCTGCTCGGAGAGGTCTCCGGCTACAGAGCATGGACGATAGTAGCGTC 240
Query 241 TTCAAACGTCGATCTTCTCTGTTATCAAACTCAAGTAGCCGCCGCAGCCACACGCCGCAA 300
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TTCAAACGTCGTTCTTCTCTGTTATCAAACTCAAGTAGCCGCCGTAGCCACACGCCGCAA 300
Query 301 GCTAGACCAACCTACCTCTCTTCCTCCGCTTCTTCCAATCGCCGTTCTGCTTTCTCAAGA 360
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GCTAGACCAACGTACCTCTCTTCCTCCGCTTCTTCCAACCGCCGTTCTGCTTTCTCAAGA 360
Query 361 AGCGCAAGCCGTAGAGACGAAGGCAGCAGCCACGGCGGAGTGAGAAGCCACGGTTTGAAA 420
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 AGCACAAGCCGTAGAGACGAAGGCAGCAGCCACAGCGGAGTGAGAAGCCACGGTTTGAAA 420
Query 421 TCACGTCCGGTATCGAACAACGCAAGTCCGATGACGTCGCCTTTCACGAGTCCGAGAGGG 480
|||||||| | || |||||| | |||||||||||||| |||||||||||||| |||||
Sbjct 421 TCACGTCCCATCTCAAACAACACCAGTCCGATGACGTCACCTTTCACGAGTCCTAGAGGA 480
Query 481 AAAGATCAAACCTTAGGTGATTTATTTGGCTCTGTACAGAAACTTTCGTCTCCTCCAAGC 540
|||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||||
Sbjct 481 AAAGATCAAACCTTAGGTGATTTATTCGGATCTGTAAAGAAACTTTCGTCTCCTACAAGC 540
Query 541 AATAGTCCGATTAACGGCGTGAAACAGTCTTCTCCTTCGTCGATTTCTAAGAGCGCTAGC 600
||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct 541 AATAGTCCGATAAACGGCGTCAAACAATCTTCTCCTTCGTCGATTTCGAAGAGTGCTAGC 600
Query 601 AAGAGAGATAAAGATGAGAGATGCTCTGCGAGCTCGGCGACGTCGACGTCTCTGCCGTTT 660
||||||||||| ||||| ||| ||||| ||||||||||||| ||||| |||||||| | |
Sbjct 601 AAGAGAGATAAGGATGAAAGAGGCTCTACGAGCTCGGCGACATCGACCTCTCTGCCATAT 660
Query 661 TCTAAGAGTAAGAGCACTAGGGATCCGGCTGGATCAATTGCGAAGAGTATAAGCCGGAGG 720
|| |||||||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct 661 TCAAAGAGTAAGAGCACGAGGGATACGGCTGGATCAATTGCAAAGAGTATAAGCCGGAGA 720
Query 721 AGCACAACGCCGATAGTGTTTTCGCAGTCTACACCGCCGAAAAAACCGCCAGCTGTGGAG 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 AGCACAACGCCGATAGTGTTTTCGCAGTCTACACCGCCGAAAAAACCACCAGCTGTGGAG 780
Query 781 AAAAAGCTTGAGTGTACGTTGGAAGAACTCTGCCATGGTGGAGTGAAGAACATCAAGATC 840
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AAAAAGCTTGAGTGTACGTTAGAAGAACTCTGCCATGGTGGAGTCAAGAACATCAAGATC 840
Query 841 AAAAGAGACATCATTACCGATGAAGGATTGATTAAGCAACAAGAAGAAATGTTAAGAGTG 900
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 AAAAGAGACATTATTACCGATGAAGGATTGATTATGCAACAAGAAGAAATGTTAAGAGTG 900
Query 901 AACATTAAACCGGGATGGAAAAAAGGGACAAAGATCACATTCGAAGGAGTAGGGAACGAA 960
|| || ||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 901 AATATCCAACCGGGATGGAAGAAAGGGACGAAGATCACATTCGAAGGAGTAGGGAACGAA 960
Query 961 AAACCGGGATATCTACCTGAAGATATCACATTCGTGGTTGAAGAAAAGAGACACCCTTTG 1020
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 961 AAACCGGGCTATCTACCTGAAGATATTACATTTGTGGTTGAAGAAAAGAGACACCCTTTG 1020
Query 1021 TTTAAAAGACGCGGAGATGACTTAGAGATTGCGGTCGAGATTCCTCTTGTAAAGGCTTTA 1080
|| |||||||| ||||| ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1021 TTCAAAAGACGTGGAGACGACTTAGAGATTGCGGTAGAGATTCCTCTTTTAAAGGCTTTA 1080
Query 1081 ACAGGATGTAAACTCTCGGTGCCACTATTGAGCGGCGAGTCAATGTCGATAACCGTAGGA 1140
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1081 ACAGGATGCAAACTCTCGGTGCCACTATTGAGCGGAGAGTCAATGTCGATAACCGTGGGA 1140
Query 1141 GATGTGATCTTCCACGGATTTGAGAAGGCGATAAAAGGTCAAGGTATGCCAAATGCTAAA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GATGTGATCTTCCACGGATTTGAGAAGGCGATAAAAGGTCAAGGTATGCCAAATGCTAAA 1200
Query 1201 GAAGAAGGTAAGCGAGGAGATTTGAAAATAACGTTTCTAGTGAATTTCCCGGAAAAGTTG 1260
||||||||||||||||| ||||||| |||||||||| |||||||||||||||| ||||||
Sbjct 1201 GAAGAAGGTAAGCGAGGGGATTTGAGAATAACGTTTTTAGTGAATTTCCCGGAGAAGTTG 1260
Query 1261 AGTGAAGAACAACGATCAATGGCCTATGAGGTTTTGAAAGATTGTTCTTGGGCATAA 1317
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1261 AGTGAAGAACAACGATCAATGGCCTATGAGGTGTTGAAAGATTGTTCTTGGGCATAA 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5