BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910857
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11110.1 | Symbols: | LisH and RanBPM domains containing pr... 1122 0.0
AT4G09300.1 | Symbols: | LisH and RanBPM domains containing pr... 250 2e-65
AT4G09280.1 | Symbols: | transposable element gene | chr4:5890... 80.5 2e-14
AT4G09230.1 | Symbols: | transposable element gene | chr4:5873... 80.5 2e-14
> AT1G11110.1 | Symbols: | LisH and RanBPM domains containing
protein | chr1:3710208-3712503 FORWARD LENGTH=1297
Length=1297
Score = 1122 bits (607), Expect = 0.0
Identities = 769/845 (91%), Gaps = 19/845 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGATTACGAAATAG-ATGTGAATGTAGTGGAGGAAGTAGACGACTTAAATCAGTA 59
||||||||| ||| || | || |||||| |||| | |||||||||| |||||||||
Sbjct 69 ATGGCAGATAACG-AAGGGAATCTGAATGAAGTGAACCAAGTAGACGAAGAAAATCAGTA 127
Query 60 TATAGTGGACGAAGGTGG-CGAAGAAAATCAGGTGGAAGCAGAGAACGAAGAAACTCAGA 118
||||||||| ||| | || |||||||||||||||||||||||||||||||||| ||||||
Sbjct 128 TATAGTGGAGGAA-GCGGACGAAGAAAATCAGGTGGAAGCAGAGAACGAAGAAGCTCAGA 186
Query 119 TTTCAGAGAACGAAGAAATTGTGATTCTGGAACCAA-CGAAGAAATTGATCATGAGTGAT 177
| ||||||||||||||| ||||||||| |||| ||| |||||||| ||||||||||||||
Sbjct 187 TATCAGAGAACGAAGAATTTGTGATTCAGGAA-CAACCGAAGAAACTGATCATGAGTGAT 245
Query 178 GTTTGGGAGCAGTATCTGAGAACTGCGGAAATTCGGAAAGAAGACATGAACAGGCTCGTG 237
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GTTTGGGAGCAGTATCTGACAACTGCGGAAATTCGGAAAGAAGACATGAACAGGCTCGTG 305
Query 238 ATGAATTTTCTTGTGGTTGAAGGATATCTAGAAGCTGTGGAGAAATTCCAAAAGGAATCT 297
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 306 ATGAACTTTCTTGTGGTTGAAGGATATCTAGAAGCTGTGGAGAAATTTCAAAAGGAATCT 365
Query 298 GGAACTAAGCCAGAAGTAGGTTTTGCGAGCATCAGTGACCGATTAGCTGTT-ATAGAGGC 356
||||||||| | |||||||| ||||||||||||||||| |||| |||||| | || ||
Sbjct 366 GGAACTAAG-C--AAGTAGGTGTTGCGAGCATCAGTGACAGATTGGCTGTTAAAAG-GGA 421
Query 357 TATCGAAAGCGGAAATCTTGACGATGCTGTTGAGAAGTTGAATGCTACAAACCCTGAGAT 416
||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 422 TATCGAAAGCGGAGATCTTGAGGATGCTGTTGAGAAGTTGAATGCTATAAATCCTGAGAT 481
Query 417 ACTGAAGACGAAtttttttCTTAATCAGCAAAGGTTTATAGAAAGAATCCGCAT-GGGGA 475
||||||||||||||||| |||||||||||| ||||| |||||| |||||||||| ||||
Sbjct 482 ACTGAAGACGAATTTTTCTCTTAATCAGCAGAGGTTCATAGAACGAATCCGCATAGGGG- 540
Query 476 TGACAGA-TGAGGAGGCC-TTAGAGTTTGCTCAGAAAGAGCTTAAACCATTGGTAGAACA 533
||||| | | ||||| || ||| | |||||| ||||||||||||||||||||||||||||
Sbjct 541 TGACA-ATTAAGGAGACCTTTA-ATTTTGCTGAGAAAGAGCTTAAACCATTGGTAGAACA 598
Query 534 GAACCTGGCGTTTCTAGAAGAAATGGCAAAGACTATGGATATACTCCGTTGTAAAGATCT 593
||||||||||||||| |||||| ||| ||| ||||||| ||||||||||| || ||||||
Sbjct 599 GAACCTGGCGTTTCTGGAAGAATTGGAAAAAACTATGGCTATACTCCGTTTTAGAGATCT 658
Query 594 CCCTAACATCCCGGAGGTGGTAG-GAGAGCTTCTTGCCAACTCACGGTGGTTTAAGACAG 652
|||| |||||||||||| | || |||||||||||| |||||||||||||||||||||||
Sbjct 659 CCCTGACATCCCGGAGGCAG-AGAGAGAGCTTCTTGACAACTCACGGTGGTTTAAGACAG 717
Query 653 CTGCCGAAGTAAATGCAGCCATTCTTACTAGCCAGACTGGTTTAAAATGTCCCAAACTTC 712
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 718 CTGCCGAAGTAAATGCAGCGATTCTTACTAGCCAGACTGGTCTAAAATGTCCCAAACTTC 777
Query 713 TACACTTGTTGAAGATGCTGATTTGGACTCAGAATCAACTGGATGAAAAAGTAGAGTATC 772
|| |||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |
Sbjct 778 TAGACTTGTTGAAGATGTTGACTTGGACTCAGAACCAACTGGATGAAAAAGTAGAGTACC 837
Query 773 CACGCATGAGTGTTTTGCCCACTGGCCAGCTCACAGTCATAAACCCACCATGGCCATCAG 832
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 838 CACGCATGAGTGTTTTGCCCACTGGCCAGCTCACAGTCATAAACCCGCCATGGCCATCAG 897
Query 833 AATGA 837
|||||
Sbjct 898 AATGA 902
> AT4G09300.1 | Symbols: | LisH and RanBPM domains containing
protein | chr4:5898798-5901014 FORWARD LENGTH=1094
Length=1094
Score = 250 bits (135), Expect = 2e-65
Identities = 474/629 (75%), Gaps = 57/629 (9%)
Strand=Plus/Plus
Query 204 GGAAATTCGGAAAGAAGACATGAACAGGCTCGTGATGAATTTTCTTGTGGTTGAAGGATA 263
||||||| || ||||||||||||||| |||||||||||| ||||||||| |||||||||
Sbjct 154 GGAAATTTTGATAGAAGACATGAACAGACTCGTGATGAATCTTCTTGTGGCTGAAGGATA 213
Query 264 TCTAGAAGCTG-TGGAGAAATTCCAAA-AGGAATCTGGAACTAAGCCAGAAGTAGGTTTT 321
| |||||||| | |||||||| |||| |||| ||| ||||| |||||| | || | ||
Sbjct 214 TAGAGAAGCTGCT-GAGAAATT-CAAAGAGGAGTCTATAACTATGCCAGAGGAAGATCTT 271
Query 322 GCGAGCATCAGTGACCGATTAGCTGTTATAGAGGCTATCGAAAGCGGAAATCTTGACGAT 381
|| ||||| | ||| ||||| | || ||| | ||||||||| | ||||||| || |||
Sbjct 272 GCTAGCATGAATGAGCGATTGGAGGTGATAAAAGCTATCGAATCCCGAAATCTCGAGGAT 331
Query 382 GCTGTTGAGAAGTTGAATGCTAC-AAACCCTGAGA-TACTGAAGACGAA-tttttttCTT 438
|| |||||||||||||||| || ||||||||||| || | || || || |||| ||
Sbjct 332 GCAATTGAGAAGTTGAATGC-ACTAAACCCTGAGATTA-TCAAAAC-AAGTTTTCACCTC 388
Query 439 AATCAGCAAAGGTTTATAGA-AAGAATCCGCATGGGGATGACAGA-TGAGGAGGCCT-TA 495
| ||||||| ||| || || | ||||| | | || || ||| ||||||| || |
Sbjct 389 CACCAGCAAATGTTGATCGAGTTG-ATCCG--T-GAGAAGA-AGACCGAGGAGG-CTGTT 442
Query 496 GAGTTTGCTCA-GAAAGAGCTTAAACCA-TTGGTAGAACAGAACCTGGCGTTTCTAGAAG 553
| |||||| || |||| | || ||| | | | || |||| ||| || | | |||
Sbjct 443 GCGTTTGCACAGGAAA-AACTCGCGCCACTAGCT-GAGGAGAATGAGGCCTTAC-A-AAG 498
Query 554 A-AA-TGGCAAAGACTA-TG-GATATACTCCGTT-GTAAAGATCTCCCTAACAT-CCCGG 607
| || ||| ||| || | || | |||||| |||| | ||| |||||||||| | |||
Sbjct 499 AGAACTGGAAAAAAC-AGTGTG-TATACT-CGTTACTGAAGGTCTCCCTAAC-TGCCC-- 552
Query 608 AGGTGGTAGGAGAGCTTCTTGC-CAACTCACGGTGGTTTAAGACAGCT-GCCGAAGTAAA 665
|| ||| |||||| || | |||||| | |||| ||| ||| ||| ||| | |||||
Sbjct 553 --GT-CCAGG-GAGCTT-TTCCACAACTCGCAGTGGATTAGGACTGCTAGCC-ACGTAAA 606
Query 666 TGCAGCCATTCTTACTAGCCAGACTGGTTTAAAATGTCCCAAACTTCTA-CACTTGTTGA 724
| ||| || | ||| ||||||||||| |||| |||| || || | | ||||||||
Sbjct 607 CGAAGCAATCCATACAAGCCAGACTGGAGAAAAAGGTCCTGAA-TTGGAGCGCTTGTTGA 665
Query 725 A-GATGCTGATTTGGACTCAGAATCAACTGGATGAAAAA---GT--A-GAGTATCCACGC 777
| || |||||||||||||||||||||||||||||||||| || | | ||||||||||
Sbjct 666 AGGA-GCTGATTTGGACTCAGAATCAACTGGATGAAAAAACAGTCTATGTGTATCCACGC 724
Query 778 ATGAGTG-TTTTGCCCACTGGCCAGCTCA 805
|||| || |||| || |||||||||||||
Sbjct 725 ATGAATGATTTTTCC-ACTGGCCAGCTCA 752
> AT4G09280.1 | Symbols: | transposable element gene | chr4:5890496-5891808
REVERSE LENGTH=897
Length=897
Score = 80.5 bits (43), Expect = 2e-14
Identities = 69/80 (86%), Gaps = 8/80 (10%)
Strand=Plus/Minus
Query 733 ATTTGGACTCAGAATCAACTGGATGAAAAA---GT--A-GAGTATCCACGCATGAGTG-T 785
|||||||||||||||||||||||||||||| || | | |||||||||||||| || |
Sbjct 186 ATTTGGACTCAGAATCAACTGGATGAAAAAACAGTCTATGTGTATCCACGCATGAATGAT 127
Query 786 TTTGCCCACTGGCCAGCTCA 805
||| || |||||||||||||
Sbjct 126 TTTTCC-ACTGGCCAGCTCA 108
> AT4G09230.1 | Symbols: | transposable element gene | chr4:5873202-5874506
REVERSE LENGTH=1305
Length=1305
Score = 80.5 bits (43), Expect = 2e-14
Identities = 69/80 (86%), Gaps = 8/80 (10%)
Strand=Plus/Minus
Query 733 ATTTGGACTCAGAATCAACTGGATGAAAAA---GT--A-GAGTATCCACGCATGAGTG-T 785
|||||||||||||||||||||||||||||| || | | |||||||||||||| || |
Sbjct 186 ATTTGGACTCAGAATCAACTGGATGAAAAAACAGTCTATGTGTATCCACGCATGAATGAT 127
Query 786 TTTGCCCACTGGCCAGCTCA 805
||| || |||||||||||||
Sbjct 126 TTTTCC-ACTGGCCAGCTCA 108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5