BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910861

Length=1161
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G11145.1 | Symbols:  | Protein of unknown function (DUF674) ...   457    1e-127


> AT1G11145.1 | Symbols:  | Protein of unknown function (DUF674) 
| chr1:3727532-3728166 REVERSE LENGTH=489
Length=489

 Score =  457 bits (247),  Expect = 1e-127
 Identities = 310/341 (91%), Gaps = 2/341 (1%)
 Strand=Plus/Plus

Query  727   GAA-TCTGTATGGGAAATAACTGGAAGCAATATCGAGCTAGGATGCATCGGCAACTTTTG  785
             ||| |||||||||||||| ||||||||||||||||| |||| |||||| |||||||||||
Sbjct  48    GAAGTCTGTATGGGAAATCACTGGAAGCAATATCGACCTAGTATGCATTGGCAACTTTTG  107

Query  786   TAGAAGCTTGAAGAACTTGAGCTCTAGCGGAAGCACGGATGCATCTAGTAACACATGTAT  845
             ||||||||||||| ||||||||||||| ||| |||| |||||||||| ||||||||||||
Sbjct  108   TAGAAGCTTGAAGGACTTGAGCTCTAGGGGAGGCACAGATGCATCTACTAACACATGTAT  167

Query  846   GCTTCCTTGGCAATATAGGCTGCAGAAATCGTTGCTTGGGGTCAGTTATCTAAACAGTGA  905
             ||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||
Sbjct  168   GCTTCCTTGGCAATATAGTTTGCAGAAACCGTTGCTTGGGGTCAGTTATTTAAACAGTGA  227

Query  906   CGGTAGTTCTCAATTGACACCTCATTGTAGCAGTGGGTTTGTGAAGAGCGGGGTAACATA  965
             |||||||||||| | |||||||||| |||||| |||||| || ||||| |||| ||||||
Sbjct  228   CGGTAGTTCTCAGTCGACACCTCATGGTAGCAATGGGTTAGTTAAGAGAGGGGCAACATA  287

Query  966   CATGGTCTCAGATGATCTTACTATTTGCATAAAGAAGAAGTTTGAAGTGAACTTGGATGA  1025
             ||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct  288   CATTGTCTCAGATGATCTTACTATTTGCGTAAAGAAGAAGTTTGATGTGAACTTGGACGA  347

Query  1026  TATTGAGGAGCATGAAATCAACATTAGCAAAACACAT-GCC  1065
             ||||   |||||||||||||||||| ||||||||||| |||
Sbjct  348   TATTTTTGAGCATGAAATCAACATTGGCAAAACACATAGCC  388



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56977618575


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5