BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910864
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11150.1 | Symbols: | transposable element gene | chr1:3728... 1646 0.0
AT1G13200.1 | Symbols: | F-box and associated interaction doma... 976 0.0
AT1G12855.1 | Symbols: | F-box family protein | chr1:4382160-4... 874 0.0
AT1G12870.1 | Symbols: | F-box and associated interaction doma... 470 2e-131
> AT1G11150.1 | Symbols: | transposable element gene | chr1:3728971-3731624
FORWARD LENGTH=2654
Length=2654
Score = 1646 bits (891), Expect = 0.0
Identities = 1117/1224 (91%), Gaps = 24/1224 (2%)
Strand=Plus/Plus
Query 11 aaaataagaaagatacgaagaag-aagaagaagaagaaacgagaagCCAGTGATTGCTCC 69
|||| || ||||| | || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1429 AAAAAAAAAAAGA-AAAAAAAAGAAAGAAGAAGAAGAAACGAGAAGCCAGTGATTGCTCC 1487
Query 70 ATCATCTCTGCCAAACGACGTCGTGGAGGAAATCTTCTTGCGATTTCCAGTGAAAGCACT 129
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1488 ATCATCTCTGCCAAATGACGTCGTAGAGGAAATCTTCTTACGATTTCCAGTGAAAGCACT 1547
Query 130 A-TT---C-C--GACTCTCTCGAAACAATGGAGATCGACGATCGAGTCTCAATCCTTCGA 182
| || | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 ATTTCGACTCAAAACTCTCTCGAAACAATGGAGATCGACGATCGAGTCTCAATCCTTCGA 1607
Query 183 AGAGAGACACTTGAGGATCGCCGAGCAATTCCGTGTGGGTCATCCTAGAGTTATGGTGAT 242
|||||||||||| | ||||||||||| ||||| || ||||||||| |||||||||||
Sbjct 1608 AGAGAGACACTTAAAGATCGCCGAGCGATTCCATGCACATCATCCTAGGGTTATGGTGAT 1667
Query 243 CACTGAAAAAGATCCCCTAAAACTAATGCCTCTAGCTCGTCCAGACACAGACATTGGTTT 302
||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||
Sbjct 1668 CACTGAAAAAGATCCCCTAAAACTATTGCCTCGACCTCGTCCAGACGCAGACATTGGTTT 1727
Query 303 TAGGTCATTCTGCTTGGAATCGGGTTCTCTTCTATCCTTTACTCTTCTCAATTTTCCTCA 362
||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1728 TAGGTTATTCTGCTTGGAATCGGGTTCTCTTCTATCCTTTATTCTTCTCAATTTCCCTCA 1787
Query 363 AAGTTTCGCCCACTATATCTATGTTTCTGGATGTTGCGATGGCCTTTTCTGCATCCATTC 422
|||||||||| |||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct 1788 AAGTTTCGCCAACTATATCTACGTTTCTGGATGCTGCGATGGCCTTTTCTGCGTCCATTC 1847
Query 423 CCCGAAATCGGAAGCCGTATATGTTGTTAATCCGGCCACACAGTGGTTACGGCAACTTCC 482
|||| |||| ||||| | ||||| || |||||||| |||| ||||||||| ||||||||
Sbjct 1848 ACCGAGATCGCAAGCCATGTATGTAGTAAATCCGGCTACACGGTGGTTACGACAACTTCC 1907
Query 483 TCCAGCTAGGTTTCAAATTTTGATGCACAAGTTTAACCCTACTTTTAGAGATTGGATAGA 542
||||||||||||||| ||||||||||| || | || |||| |||||||||| ||||
Sbjct 1908 TCCAGCTAGGTTTCAGATTTTGATGCA-AA----AGGCC-ACTTATAGAGATTGGTTAGA 1961
Query 543 CATGGAGTCAGTCTTTCATCTAGCCTTCGTGAAGGCCACTAATTACAAATTAGTGTGGTT 602
|||| ||||||||||||||||||| ||||||||||||| | |||| ||||||||||||||
Sbjct 1962 CATGAAGTCAGTCTTTCATCTAGCATTCGTGAAGGCCAATGATTATAAATTAGTGTGGTT 2021
Query 603 GTATAATTCTGATAAGTACAATGCTGATGCCTCGAGTCCAAACGAGGGAGTTACCAAGTG 662
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 2022 GTATAATTCTGACAAGTACAATGCTGATGCCTTGAGTCCAAACGAGGGAGTTACAAAGTG 2081
Query 663 CGAGGTTTTTGACTTCAGGGCAAACGCTTGGAG-GTACTTGGCTTGCACTCCAAGTTATC 721
||||||||||||||| ||||||||| ||||||| | ||||| ||||||||||||||||||
Sbjct 2082 CGAGGTTTTTGACTTTAGGGCAAACTCTTGGAGAG-ACTTGACTTGCACTCCAAGTTATC 2140
Query 722 GGATATATCATGATCAAATACCAGCATGTGCAAACGGGTCAGTATATTGGTTCACGGAGC 781
|||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2141 GGATATTTCATGGCCAAATACCAGCATGTGCAAACGGGTCAGTATATTGGTTGACGGAGC 2200
Query 782 CATATAATGATAAAATCGAAGTAGTGGCTTTTGATATTCATACCGAATCATTCCGGTTGC 841
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2201 CATATAATGATAAAATCGAAGTAGTGGCTTTTGATATTCATGCCGAATCATTCCGGTTGC 2260
Query 842 TGCCTAAGATTAAACCGGCTATTGCTGGTTCAGATCCGAGGCATATTGACATGTGCACTC 901
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2261 TGCCTAAGATCAAACCGGCTATTGCTGGTTCAGATCCGATGCATATTGACATGTGCACTC 2320
Query 902 TGGATAATGGTTTGTGCATGTCGAAAAGAGAACCGGATACGTTGGTCCAAGAGATTTGGA 961
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2321 TGGATAATGGTTTGTGCATGTCGAAAAGAGAACCGAATACGTTGGTCCAAGAGATTTGGA 2380
Query 962 GGTTGAAATCATCAGAAGACTTATGGGAGAAGATTTATACCATTGATTTGCTTTCTTGTT 1021
||||||||||||||||||||| |||||||||||||| ||| || ||||||||||| ||||
Sbjct 2381 GGTTGAAATCATCAGAAGACTCATGGGAGAAGATTTGTACTATAGATTTGCTTTCATGTT 2440
Query 1022 CTTCTTCCCGGAATCAGTTTCGCGATGAATTTGACTGG-A-GCAGGAAGGATTTGGTTGA 1079
|||||||||||| ||||||||| ||||||||| ||||| | | || | |||||||||| |
Sbjct 2441 CTTCTTCCCGGACTCAGTTTCGTGATGAATTTTACTGGGACG-AGCA-GGATTTGGTTAA 2498
Query 1080 TCCATCCACACCGGTGGCGGTATGCAAGAACAAGA-AGATCTTGCTCTCACATCGCTATT 1138
|||||||||||| |||||| ||||||||||||||| | || |||||||||||||||||||
Sbjct 2499 TCCATCCACACCTGTGGCGTTATGCAAGAACAAGACA-ATTTTGCTCTCACATCGCTATT 2557
Query 1139 CCCGCGGTCTGGTAAAATATGATCCCCTAACAAGGTCTCTAACTTCGTTTTACCAACATC 1198
||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||| ||
Sbjct 2558 CCCGCGGTCTGCTAAAATATGATCCCCTAACAAAGTCTCTAGCTTCATTTTACCAACGTC 2617
Query 1199 CTTTGTCTAAGAGAAAAGTT-CTT 1221
|||||||| |||||||||| |||
Sbjct 2618 CTTTGTCTCGGAGAAAAGTTTCTT 2641
> AT1G13200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:4507221-4508528 REVERSE LENGTH=1308
Length=1308
Score = 976 bits (528), Expect = 0.0
Identities = 968/1174 (82%), Gaps = 55/1174 (5%)
Strand=Plus/Plus
Query 30 gaagaagaagaagaagaaacgagaagCCAG---TGATTGCTCCATCATC-TCTGCCAAAC 85
||| ||||||||||||||||||||||| || | || | ||||||||| | | ||||||
Sbjct 78 GAA-AAGAAGAAGAAGAAACGAGAAGCGAGTACTAATGGTTCCATCATCAT-TACCAAAC 135
Query 86 GACGTCG-TGGAGGAAATCTTCTTGCGATTTCCAGTGAAAGCACTATTCCG-----A--C 137
||||| | | ||||| ||||| || ||||||| || ||||| ||| |||| | |
Sbjct 136 GACGT-GCTAGAGGAGATCTTTTTAAGATTTCCGGTTAAAGCCCTAATCCGACTCAAGTC 194
Query 138 TCTCTCGAAACAATGGAGATCGACGATCGAGTCT--CAATCCTTCGAAGAGAGACACTTG 195
|||||||||||||||||||||||||||||| ||| || | || |||||||||||||||
Sbjct 195 TCTCTCGAAACAATGGAGATCGACGATCGAATCTCGCAGT--TTTGAAGAGAGACACTTG 252
Query 196 AGGATCGCCGAGCAATTCCGT-GTGGGTCAT-CCTAGAGTTATGGT-GATCACTGA-AA- 250
| |||||| || || || | |||| |||| || || || ||| | | | | || ||
Sbjct 253 ACGATCGCTAAG-AAAGCCTTCGTGGATCATCCCAAG-GTCATGCTCG-T-A-GGAGAAG 307
Query 251 AAGATCCCCTAAAACTAATGCCTCTAGCTCGTCCAGACACAGACATTGGTTTTAGGTCAT 310
|||||||| ||| | || || | |||||||||||| |||||||||||||||| ||
Sbjct 308 AAGATCCCATAAGAGGAA--CCGGGA-TTCGTCCAGACACTGACATTGGTTTTAGGTTAT 364
Query 311 TCTGCTTGGAATCGGGTTCTCTTCTATCCTTTACTCTTCTCAATTTTCCTCAAAGTTTCG 370
||||||||||||||| |||||||||||||||||||| ||||||||| |||||| | |||
Sbjct 365 TCTGCTTGGAATCGGCTTCTCTTCTATCCTTTACTCGTCTCAATTTCCCTCAAGGGTTCT 424
Query 371 CCCACTATATCTATGTTTCTGGATGTTGCGATGGCCTTTTCTGCATCCATTCCCCGAAAT 430
| ||| ||||| | |||| | | || |||||||||||||||||||||||||| ||||
Sbjct 425 TCAACTGGATCTACATATCTGAAAGCTGTGATGGCCTTTTCTGCATCCATTCCCCAAAAT 484
Query 431 CGGAAGCCGTATATGTTGTTAATCCGGCCACACAGTGGTTACGGCAACTTCCTCCAGCTA 490
| | |||||||||| || |||||||| |||| |||| | || | ||||||||| || |
Sbjct 485 CACATTCCGTATATGTAGTGAATCCGGCTACACGGTGGCTCCGCCTACTTCCTCCGGC-A 543
Query 491 -GGTTTCAAATTTTGATGCACAAGTTTAACCCTACTTTTA-GAGATTGG-A--TAGACAT 545
||||||| |||||||| |||||||||||||| || | | | || ||| | ||| ||
Sbjct 544 GGGTTTCAGATTTTGATCCACAAGTTTAACCCCAC-TGAACGTGAGTGGAATGTAGTGAT 602
Query 546 GGAGTCAGTCTTTCATCTAGCCTTCGTGAAGGCCACTAATTACAAATTAGTGTGGTTGTA 605
| | ||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 603 GAAATCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTACAAATTAGTGTGGTTGTA 662
Query 606 TAATTCTGATAAGTACAATGCTGATGCCTCGAGTCCAAACGAGGGAGTTACCAAGTGCGA 665
|||| ||||||||||| || |||||| ||||||||||||| |||||| || ||||||||
Sbjct 663 CAATTGTGATAAGTACATTGTTGATGCGTCGAGTCCAAACGTGGGAGTCACAAAGTGCGA 722
Query 666 GGTTTTTGACTTCAGGGCAAACGCTTGGAGGTACTTGGCTTGCACTCCAAGTTATCGGAT 725
| |||||||||| ||| ||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 723 GATTTTTGACTTTAGGAAAAATGCTTGGAGGTACTTGGCTTGCACTCCAAGTCATCAGAT 782
Query 726 ATATC-ATGATCAAATA-CCAGCATGTGCAAACGGGTCAGTATATTGGTTCACGGAGCCA 783
|| || || | |||| | ||||||| |||||||||||| || |||||||| || || |||
Sbjct 783 AT-TCTATTACCAAA-AGCCAGCATCTGCAAACGGGTCGGTTTATTGGTTTACAGAACCA 840
Query 784 TATAATGATAA-AATCGAAGTAGTGGCTTTTGATATTCATACCGAATCATTCCGGTTGCT 842
|||||||| || ||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 841 TATAATGA-AAGAATCGAAGTAGTGGCTTTTGATATTCAGACCGAAACATTCCGGTTGCT 899
Query 843 GCCTAAGATTAAACCGGCTATTGCTGGTTCAGATCCG-AGGCATATTGACATGTGCACTC 901
|||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 900 GCCTAAGATTAATCCGGCTATTGCTGGTTCAGATCCTCAC-CATATTGACATGTGCACTC 958
Query 902 TGGATAATGGTTTGTGCATGTCGAAAAG--AGAACCGGATACGT-TGGTCCAAGAGATTT 958
|||||||| ||||||| ||||||||||| |||| | |||| | || ||||||| ||||
Sbjct 959 TGGATAATAGTTTGTGTATGTCGAAAAGGGAGAAA-G-ATAC-TATGATCCAAGATATTT 1015
Query 959 GGAGGTTGAAATCATCAGAAGACTTATGGGAGAAGATTTATACCATTGATTTGCTTTCTT 1018
||||||||||| ||||||||||| |||||| ||||||| || ||| || ||| |||| |
Sbjct 1016 GGAGGTTGAAACCATCAGAAGACACATGGGAAAAGATTTTTAGCATAGACTTGGTTTCCT 1075
Query 1019 GTTCTTCTTCCCGGAATCAGTTTCGCGATGAATTTGACTGGAGCAGGAAGGATTTGGTTG 1078
|| ||||||| |||| | || || ||| ||||||| ||||||| ||||||| |||||
Sbjct 1076 GTCCTTCTTCTCGGACTGAGAAGCGTGATCAATTTGATTGGAGCAAGAAGGATAGGGTTG 1135
Query 1079 ATCCATCCACACCGGTGGCGGTATGCAAGAACAAGAAGATC-TTGCTCTCACATCGCTAT 1137
| ||| ||||||| || ||||| || ||||| ||||||||| || |||||||||||||||
Sbjct 1136 AGCCAGCCACACCCGTCGCGGTTTGTAAGAATAAGAAGATCCTT-CTCTCACATCGCTAT 1194
Query 1138 TCCCGCGGTCTGGTAAAATATGATCCCCTAACAA 1171
||||| ||| ||||||| || |||||||||||||
Sbjct 1195 TCCCGAGGTTTGGTAAAGTACGATCCCCTAACAA 1228
> AT1G12855.1 | Symbols: | F-box family protein | chr1:4382160-4383611
FORWARD LENGTH=1452
Length=1452
Score = 874 bits (473), Expect = 0.0
Identities = 989/1228 (81%), Gaps = 75/1228 (6%)
Strand=Plus/Plus
Query 18 gaaagatacgaagaaga---agaagaagaagaaacgagaagCCAGTGATTGCTCCATCAT 74
|||||| | |||||| | ||| ||||| ||||||||||| ||||| |||| |||||||
Sbjct 212 GAAAGAGAAGAAGAATACCTAGAGGAAGAGGAAACGAGAAGGCAGTGTTTGCACCATCAT 271
Query 75 CTCTGCCAAACGACGTCGTGGAGGAAATCTTCTTGCGATTTCCAGTGAAAGCACT-ATTC 133
| || |||||||| || || |||||||||||||| ||| |||| ||||||||| | || |
Sbjct 272 CACTACCAAACGATGTTGTAGAGGAAATCTTCTTACGACTTCCGGTGAAAGCAATAATCC 331
Query 134 --C----GACTCTCTCGAAACAATGGAGATCGACGATCGAGTCT--CAATCCTTCGAAGA 185
| | ||||||| ||||||||||||||||||||||||||| || | || |||||
Sbjct 332 AACTAAAGTCTCTCTCAAAACAATGGAGATCGACGATCGAGTCTCGCAGT--TTTGAAGA 389
Query 186 GAGACACTTGAGGATCGCCGAGCAATTC-CGTGTGGGTCATCCTAGA-GTTATGGTGATC 243
||||||||||| ||||| ||||| | || || |||| | ||| | | || ||||| ||
Sbjct 390 GAGACACTTGAAGATCGTCGAGCGA-TCACGCGTGGATTTTCC-ACAGGTCATGGTCATG 447
Query 244 ACTGAAAAAGATCCCCT--AA--AACT-AATG-CCTCTAG-CTCGTCCAGACACAGACAT 296
||||| || || || | || || | || | || || |||||||||| ||||||||
Sbjct 448 TCTGAAGAATATTCCTTGAAAGGAAGTAAAGGTAATC-AGCCTCGTCCAGATACAGACAT 506
Query 297 TGGTTTTAGGT-CATTCTGCTTGGAATCGGGTTCTCTTCTATCCTTTACTCTTCTCAATT 355
|||||||| || || |||| |||||||||| |||| |||| |||| |||||| ||| ||
Sbjct 507 TGGTTTTA-GTACAATCTGTTTGGAATCGGCTTCTATTCTGTCCTCCACTCTTATCACTT 565
Query 356 TTCCTCAAAG-TTTCGCCCACTATATCTATGTTTCTGGATGTTGCGATGGCCTTTTCTGC 414
| |||||| | |||| ||| ||||||| ||||| | | || || || |||||||||
Sbjct 566 TCCCTCAAGGATTTC-AACACCGGATCTATGCTTCTGAAAGCTGTGACGGACTTTTCTGC 624
Query 415 ATCCATTCCCCGAAATCGGAAGCCGTATATGTTGTTAATCCGGCCACACAGTGGTTACGG 474
|||||||||| ||| | ||||| ||||||| ||||| |||||||| | |||||| ||
Sbjct 625 ATCCATTCCCTAAAAACACAAGCCATATATGTAGTTAACCCGGCCACTCGGTGGTTTCGA 684
Query 475 CAACTTCCTCCAGCTAGGTTTCAAATTTTGATGCACAAGTTTA-ACCCTACTTTTAGAGA 533
||||||||||| ||||||||||| ||||||||||| ||| ||| |||| || | ||| |
Sbjct 685 CAACTTCCTCCGGCTAGGTTTCAGATTTTGATGCAAAAG-TTATACCCCAC-TCAAGACA 742
Query 534 -TTGGATAGACAT----GGAGTCAGTCT-TTCAT-CTAGCCTTCGTGAAGGCCACTAATT 586
|||||| ||||| ||| ||||| || || | ||| ||||||||||||| | |||
Sbjct 743 CTTGGATTGACATAAAACCAGT-AGTCTGTT-ATAC-AGCATTCGTGAAGGCCAATGATT 799
Query 587 ACAAATTAGTGTGGTTGTATAATTCTGATAAGTACAATGCTGATGCCTCGAGTCCAAACG 646
||||||||||||||||| | |||| | | |||||||||||| |||||||
Sbjct 800 ACAAATTAGTGTGGTTG--------T-ATAA-T----T-CTGATGCCTCGAATCCAAACC 844
Query 647 AGGGAGTTACCAAGTGCGAGGTTTTTGACTTCAGGGCAAACGCTTGGAGGTACTTGGCTT 706
||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct 845 TGGGAGTTACAAAGTGCGAGGTTTTTGATTTTAGGGCAAACGCTTGGAGGTACTTGACTT 904
Query 707 GCACTCCAAGTTATCGGATATAT-CATGATCAAATACCAGCATG-TGCAAACGGGTC-AG 763
|||||||||| |||||||||| | | ||| ||| |||||||| | | |||||||||| |
Sbjct 905 GCACTCCAAGCTATCGGATAT-TCCCTGACCAAGTACCAGCA-GCTACAAACGGGTCTA- 961
Query 764 TATATTGGTTCACGGAGCCATATAATGATAAAATCGAAGTAGTGGCTTTTGATATTCATA 823
| |||||||||||||| |||||||||| |||| |||| || ||| | |||||||| |
Sbjct 962 TTTATTGGTTCACGGAACCATATAATGGCGAAATAAAAGTGGTAGCTCTCGATATTCACA 1021
Query 824 CCGAATCATTCCGGT-TGCTGCCTAAGATTAAACCGGCTATTGCTGGTTCAGATCC-GAG 881
| ||| | || | || |||| ||||||||||| ||||| |||||| |||||||||| ||
Sbjct 1022 CTGAAACGTTTC-GTGTGCTACCTAAGATTAATCCGGCCATTGCTAGTTCAGATCCTGA- 1079
Query 882 GCATATTGACATGTGCACTCTGGATAATGGTTTGTGCATGTCGAAAAGAGAACCGGATAC 941
||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1080 CCATATCGACATGTGCACTTTGGATAATGGTTTGTGCATGTCGAAAAGAGAATCGGATAC 1139
Query 942 GTTGGTCCAAGAGATTTGGAGGTTGAAATCATCAGAAGACTTATGGGAGAAGATTTATAC 1001
||||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||||
Sbjct 1140 GTTGGTCCAAGAGATATGGAGGTTAAAATCATCAGAAGACTCATGGGAGAAGGTTTATAC 1199
Query 1002 CATTGATTTGCTTTCTTGTTCTTCTTCC-CGGAATC--AGTTTCGCGATGAATTTGACTG 1058
||| ||||||||||||||||||||||| | ||| |||| ||||||| |||| | ||
Sbjct 1200 CATAGATTTGCTTTCTTGTTCTTCTTCTTCTTTATCTGAGTTCCGCGATGGATTTAATTG 1259
Query 1059 GAGCAGGAAG-GATTTGGTTGATCCATCCACACCGGTGGCGGTATGCAAGAACAAGAAGA 1117
|| || ||| ||||||||||| ||||||||||| |||||| |||||||| |||||||||
Sbjct 1260 GA-CACGAAAAGATTTGGTTGAGCCATCCACACCAGTGGCGATATGCAAGGACAAGAAGA 1318
Query 1118 T-CTTGCTCTCACATCGCTATTCCCGCGGTCTGGTAAAATATGATCCCCTAACAAGGTCT 1176
| || |||||||||||||||| ||||| | || | ||||| ||||||| || || |||
Sbjct 1319 TTCT-GCTCTCACATCGCTATGCCCGCAATATGATCAAATACGATCCCCAAATAAAATCT 1377
Query 1177 CTAACTTCGTTTTACCAACATCCTTTGT 1204
| | || ||||||||| ||||||||
Sbjct 1378 ATCAGTTTAATTTACCAACCTCCTTTGT 1405
> AT1G12870.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:4387129-4389110 REVERSE LENGTH=1251
Length=1251
Score = 470 bits (254), Expect = 2e-131
Identities = 709/914 (78%), Gaps = 90/914 (10%)
Strand=Plus/Plus
Query 282 TCCAGACACAGACATTGGTTTTAGGTCAT-TCTGC-TTGGAATCGGGTT-CTCTTCTATC 338
|||||||| ||| ||| |||||||| | | ||| | |||||||| ||| | || ||||
Sbjct 285 TCCAGACATAGAGATTAGTTTTAGGAC-TATCT-CTTTGGAATC-AGTTAGTTTTTTATC 341
Query 339 CTTTACTCTTCTCAATTTTCCTCAAAGTTTCGC-CCACT-ATATCTATGTTTCTGGATGT 396
|| | ||||| ||||||| |||| | ||| | || | ||||| | ||||| | |
Sbjct 342 CTCTGCTCTTTTCAATTTCCCTCGCGGATTC-CATCA-TCCCATCTACGCTTCTGAAAGC 399
Query 397 TGCGATGGCCTTTTCTGCATCCATTCCCCGAAATCGGAAGCCGTATATGTTGTTAATCCG 456
|| || || |||||||||| |||||||| ||| | ||| | ||||||| ||||||||
Sbjct 400 TGTGACGGAATTTTCTGCATTCATTCCCCAAAAACACAAGACATATATGTAGTTAATCCA 459
Query 457 GCCACACAG-TGGTTACGGCAACTTCCTCCAGCTAGGTTTCAAAT-TTTGATGCACAAGT 514
|| |||| | ||||| || ||||||||||| ||||||||||| || ||| ||||||||||
Sbjct 460 GCAACAC-GTTGGTTCCGACAACTTCCTCCGGCTAGGTTTCAGATCTTT-ATGCACAAGT 517
Query 515 TTAACCCTACTTTTAGAGA-TTGGATAGACATGGAGT--CAGTCTTTCATCTAGCCTTCG 571
| ||||| || | |||| | || || |||||| || | ||||| ||||||||| ||||
Sbjct 518 TAAACCCCAC-TCTAGATACTTTGAGAGACAT-GA-TACCAGTCAATCATCTAGCATTCG 574
Query 572 TGAAGGCCACTAATTACAAATTAGTGTGGTTGTATAATTCTGATAAGTACAATGCTGATG 631
||||||||||| |||||||||||||||||||| | || | || | ||||||
Sbjct 575 TGAAGGCCACTGATTACAAATTAGTGTGGTTG--------T-AT-A--AC--T-CTGATG 619
Query 632 CCTCGAGTCCAAACGAGGGAGTTACCAAGTGCGAGGTTTTTGACTTCAGGGCAAACGCTT 691
| | | ||| ||||||| ||||||||||||||||| || | |||||||||||
Sbjct 620 -C-C---T-----CGA--GAGTTACTAAGTGCGAGGTTTTTGATTTTAAGGCAAACGCTT 667
Query 692 GGAGGTACTTGGCTTGCACT-CCAAGTTATCGGATATATCATGATCAAATA-CCAGCATG 749
|||| |||||| |||||| | ||||||||||| ||||||||||| |||| | |||||||
Sbjct 668 GGAGATACTTGACTTGCA-TACCAAGTTATCGAATATATCATGACCAAA-AGCCAGCATC 725
Query 750 TGCAAACGGGTCAG-TATATTGGTTCACGGAGCCATATAATGATA-AAATCGAAGTAGTG 807
|||||||||| | | | |||||||||||||| ||||||||| | ||||| ||||| |
Sbjct 726 TGCAAACGGGAC-GCTTTATTGGTTCACGGAAACATATAATG-CAGAAATCAAAGTAATA 783
Query 808 GCTTTTGATATTCATACCG-AATCATTCCGGTTGCTGCCTAAGATTAAACCGGCTATTGC 866
||||| |||||||| |||| ||| ||| ||||||||||||||| | | || ||||||
Sbjct 784 GCTTTGGATATTCACACCGAAAT-ATTTCGGTTGCTGCCTAAGCCT-AGCC--TTATTGC 839
Query 867 TGGTTCAGATCCGAGGCATATTGACATGTGCACTCTGGATAATGGTTTGTGCATGT-CGA 925
| ||||||| || || |||||||||||||||| | | |||||| |||||||||||| ||
Sbjct 840 TAGTTCAGAGCCTAGCCATATTGACATGTGCATTATAGATAATAGTTTGTGCATGTACG- 898
Query 926 AAAGAGAACCGGAT---ACGTTGGTCCAAGAGATTTGGAGGTTGAAATCATCAGAAGACT 982
||| |||| |||| | | | |||||||||||||||||||||||||||| ||||||
Sbjct 899 AAACAGAAGGGGATAAGAAGATCATCCAAGAGATTTGGAGGTTGAAATCATCGGAAGACG 958
Query 983 TATGGGAGAAGATTTATACCATTGATTTGCTTTCTTGTTCTTCTTCCCGGAAT-C-A-GT 1039
||||||||||||||||||||| || ||||||||| ||||| || || | | | | ||
Sbjct 959 CATGGGAGAAGATTTATACCATAAATCTGCTTTCTTCTTCTTATTGCC--ATTTCCATGT 1016
Query 1040 T-TCGC-G-ATG-AATTTGACTGGA----GC-A--GGA---A---GGATTTGGTTGA-TC 1081
| ||| | || |||||||| || | | ||| | |||||||||||| ||
Sbjct 1017 TCTCGATGGATATAATTTGACCAGATTATGTTATTGGACCCAAAAGGATTTGGTTGAGTC 1076
Query 1082 CATCCACACCGGTGGCGGTATGCAAGAACAAGAAGATCTTGCTCTCACATCGCTATTCCC 1141
|||||||||||||||| ||| |||| ||||||||||| | ||||||||||||||| ||
Sbjct 1077 -ATCCACACCGGTGGCGATATACAAGGACAAGAAGATCATACTCTCACATCGCTATACCT 1135
Query 1142 GCGGTCTGG-TAAA 1154
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Sbjct 1136 GCAATCTGGGTAAA 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5