BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910866
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11170.1 | Symbols: | Protein of unknown function (DUF707) ... 2095 0.0
AT1G61240.1 | Symbols: | Protein of unknown function (DUF707) ... 1024 0.0
> AT1G11170.1 | Symbols: | Protein of unknown function (DUF707)
| chr1:3740765-3744675 FORWARD LENGTH=1763
Length=1763
Score = 2095 bits (1134), Expect = 0.0
Identities = 1258/1316 (96%), Gaps = 16/1316 (1%)
Strand=Plus/Plus
Query 1 ATGATACATGGTTTGCCATCTATGAAGTCGATCAAATCATTGAAGTCACTTGTTAAAAGA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 231 ATGATACATGGTTTGCCATCTATGAAGTCTATCAAATCATTGAAGTCACTTGTTAAAAGA 290
Query 61 AAAACCAATGCTCAAGAAGTGAGTAAATCCGGGTGGAAAATGAAGCCTTTTTTAGCTCTC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 291 AAAACCAATGCTCAAGAAGTGAGTAAATCCGGGTGGAAAATGAAGCCCTTTTTGGCTCTC 350
Query 121 ATGTGTACAGCTCTTTTGATCTTTTGGTATAAGACCACAAATATTCAGTTTGAACAAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 ATGTGTACAGCTCTTTTGATCTTTTGGTATAAGACCACAAATATTCAGTTTGAACAAACA 410
Query 181 GAGATAGAAGAAACAGATTATCCTTTTGACATGGCAAAGGAATCTGAAGCAGTTAACGAT 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 411 GAGATAGAAGAAACAGATTATCCTTTTGACATGGCTAAGGAATCTGAAGCAGTTAACGAT 470
Query 241 AAATTAAAAGGCTTGCCTCATGGAATCATACAGCCTAGATCAGATCTTGAATTAAAACCT 300
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||
Sbjct 471 AAATTAAAAGGCTTGCCTCGTGGAATCATACAGTCTAGATCAGATCTTGAATTAAAGCCT 530
Query 301 CTCTGGTCTAGAAGTAGTCTGAGGTCAAAGGGTGTTGAAATGACTAACCGTAACTTGTTG 360
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 531 CTCTGGTCTAGAGGTAGTCTGAGGTCAAAGGGTGTGGAAATGACTAACCGTAACTTGTTG 590
Query 361 GCAATACCCGTAGGAATTAAGCAAAAGGTTAATGTCGATGCTCTTGTAAAGAAGTTTCTT 420
||||||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 591 GCAATACCCGTAGGACTTAAGCAAAAGGGTAACGTCGACGCTCTTGTAAAGAAGTTTCTT 650
Query 421 CCCGCGAATTTCACGATTGTTCTTTTCCATTACGATGGAAATATGGATAAATGGTGGGAT 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 651 CCCGCGAATTTCACGATTGTTCTTTTCCATTATGATGGAAATATGGATAAATGGTGGGAT 710
Query 481 CTAGAGTGGAGTTCAAAGGCCATACATATAGTTGCACAAAACCAGACTAAATGGTGGTTT 540
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CTGGAGTGGAGTTCAAAATCCATACATATAGTTGCACAAAACCAGACTAAATGGTGGTTT 770
Query 541 GCAAAACGATTCCTCCATCCAGATGTTGTATCCATTTATGATTATATTTTTCTTTGGGAC 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 771 GCAAAACGATTCCTCCATCCGGATGTTGTATCCATTTATGATTATATTTTTCTTTGGGAC 830
Query 601 GAGGATCTTGGAGTAGAGAATTTCAATCCAGAGAGATATTTGAGGATAGTTAAATCAGTG 660
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 831 GAGGATCTTGGAGTAGAGAATTTCAATCCAGAGAGATATTTGAAGATAGTTAAATCAGTG 890
Query 661 GGACTGGAGATATCTCAACCGGCTTTGGATCATAACTCAACTGAAATCCACCATAAAATC 720
||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||
Sbjct 891 GGACTGGAGATATCTCAACCGGCTTTGGACCACAACTCGACTGAAATACACCATAAAATC 950
Query 721 ACACTCCGTTCTAGGACAAAGAAATTTCATAGGAGAGTTTACATCAATAGAGGCCATAAA 780
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 ACTCTCCGTTCTAAAACAAAGAAATTTCATAGGAGAGTTTACATCAATAGAGGCCATAAA 1010
Query 781 AGGTGTTCTAATACTAG-TGCAGATCCTCCTTGCACCGGATTTGTTGAAGGAATGGCTCC 839
|| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 AGATGTTCTAATACTAGCT-CAGATCCTCCTTGCACCGGATTTGTTGAAGGAATGGCTCC 1069
Query 840 GGTGTTTTCGAAAGCTGCTTGGTTTTGCACTTGGAATCTTATACAGAATGATTTGGTTCA 899
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1070 GGTGTTTTCGAAAGCTGCTTGGCTTTGCACTTGGAATCTTATACAGAATGATTTGGTTCA 1129
Query 900 TGGATGGGGAATGGATATGAAACTTGGGTACTGCGCACAGGGAGACCGAACGAAAAACGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 TGGATGGGGAATGGATATGAAACTTGGGTACTGCGCACAGGGAGACCGAACGAAAAACGT 1189
Query 960 AGGGATTGTGGATAGTGAGTATATCGTTCATCAAGGCATTCAAACTTTAGGTGAAAGTGT 1019
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1190 AGGGATTGTGGATAGCGAGTATATCCTTCATCAAGGCATTCAAACTTTAGGTGAAAGTGT 1249
Query 1020 TCCTGAAAAGAAGACCACTGCGCGTGATGTTAGGG-CCAGGAGACACAG-CCATACAACC 1077
|||||| ||||||| || || ||||||||| ||| |||||||||| || |||||||||
Sbjct 1250 TCCTGAGAAGAAGAAGACGGCTCGTGATGTT-GGGACCAGGAGACA-AGGCCATACAACT 1307
Query 1078 TTTGATTCAAGAACCGAGATAAGGAGACAATCGACATGGGAGCTTCAAACTTTTAAAGAA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TTTGATTCAAGAACCGAGATAAGGAGACAATCGACATGGGAGCTTCAAACTTTTAAAGAA 1367
Query 1138 CGATGGAGCAAAGCGGTAGAAGAAGACAATAACTGGATCGATCCATCGTCATCAAGCTCG 1197
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1368 CGATGGAGCAAAGCGGTAGAAGAAGACATTAAGTGGATCGATCCATCGTCATCAAGCTCG 1427
Query 1198 ATGACAAAGAGGAGGACGAGTAACGGTAATAACAGAAGATTAAGGCGTGGTACTAGT--- 1254
||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1428 ATGACAAAGAGGA--A-GAGTAACGGTAATAACAGAAGATTAAGGCGTGGTAGTAGTAGT 1484
Query 1255 ---CACCGAGTAAAGCATAAGAGAACTCAGGAGACATCAACAACAACAA-AACACA 1306
|||||||||||||||||||||| ||| |||||||||| |||||||| ||||||
Sbjct 1485 AGTCACCGAGTAAAGCATAAGAGAAGTCAAGAGACATCAAGAACAACAACAACACA 1540
> AT1G61240.1 | Symbols: | Protein of unknown function (DUF707)
| chr1:22582178-22585203 FORWARD LENGTH=1702
Length=1702
Score = 1024 bits (554), Expect = 0.0
Identities = 976/1174 (83%), Gaps = 51/1174 (4%)
Strand=Plus/Plus
Query 27 GTCGATCAAATCATTGAAGTCACTTGTTAAAAGAA-AAACCAATGCTCAAGAAGTGAGTA 85
||| || ||||||| ||||||||||||||| |||| ||| |||||||||||||| | |||
Sbjct 289 GTCTATTAAATCATGGAAGTCACTTGTTAAGAGAAGAAA-CAATGCTCAAGAAGGGGGTA 347
Query 86 AATCCG-GGTGGAAAATGAAGCCTTTTTTAGCT-CTCATGTGTACAGCT-CTTTTGATCT 142
||| || ||||||||||| || || | | | || |||||||||| | ||||||||||
Sbjct 348 AAT-CGTCATGGAAAATGAAACCAGTTGT-GGTGCTAATGTGTACAG-TACTTTTGATCT 404
Query 143 TTTGGTATAAGACCACAAATATTCAGTTTGAACAAACAGAGATAGAAGAAACAGATTATC 202
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 405 TTTGGTATAAGACTACAAATATTCAGTATGAACAAACAGAGATAGAAGAAACAGATTATC 464
Query 203 CTTTTGACATGGCAAAGGAATCTGAAGCAGTTAACGATAAA-TTAAAAGGCTTGCCTCAT 261
| ||||| |||||||||||||||||| | || | || ||| || |||||||| ||| |
Sbjct 465 CATTTGAGATGGCAAAGGAATCTGAACCGGTCAGTGA-AAAGTTGAAAGGCTTACCTTTT 523
Query 262 GGAATCATACAGCCTAGATCAGATCTTGAA-TTAAAACCTCTCTGGTCTAGAAGTAGTCT 320
|| ||||| || |||| ||||||| ||| | ||||| || || ||||| || |||||| |
Sbjct 524 GGTATCATGCAACCTAAATCAGAT-TTGGAGTTAAAGCCACTTTGGTCAAGTAGTAGTTT 582
Query 321 GAGGTCAAAGGGTGTTGAAATGACTAACCGTAACTTGTTGGCAATACCCGTAGGAATTAA 380
|||||||||| | | ||| |||| |||||||||||||||||||| || |||||| ||||
Sbjct 583 GAGGTCAAAGAGCGGCGAATTGACCAACCGTAACTTGTTGGCAATGCCGGTAGGACTTAA 642
Query 381 GCAAAAGGTTAATGTCGATGCTCTTGTAAAGAAGTTTCTTCCCGCGAATTTCAC-GATTG 439
|||||||| |||||| |||||| ||||||||||||||||||| ||||||||||| | |
Sbjct 643 GCAAAAGGATAATGTTGATGCTGTTGTAAAGAAGTTTCTTCCTGCGAATTTCACTG-TCA 701
Query 440 TTCT-TTTCCATTACGATGGAAATATGGATAAATGGTGGGATCTAGAGTGGAGTTCAAAG 498
|||| |||| |||| |||||||| |||||| |||||||||||||||||||||| |||||
Sbjct 702 TTCTATTTC-ATTATGATGGAAACATGGATCAATGGTGGGATCTAGAGTGGAGCTCAAAA 760
Query 499 GCCATACATATAGTTGCACAAAACCAGACTAAATGGTGGTTTGCAAAACGATTCCTCCAT 558
|||||||| || |||||||| ||||| || |||||||||||||| ||||| || ||||||
Sbjct 761 GCCATACACATTGTTGCACATAACCAAACAAAATGGTGGTTTGCGAAACGTTTTCTCCAT 820
Query 559 CCAGATGTTGTATCCATTTATGATTATATTTTTCTTTGGGACGAGGATCTTGGAGTAGAG 618
|| ||| |||| |||||||| |||||| ||||||||||||| || ||||||||||| |||
Sbjct 821 CCTGATATTGTCTCCATTTACGATTATGTTTTTCTTTGGGATGAAGATCTTGGAGTGGAG 880
Query 619 AATTTCAATCCAGAGA-GATATTTGAGGATAGTTAAATCAGTGGGACTGGAGATATCTCA 677
|||||||| || | | | || |||||||||||||| ||| ||||||||||||||||||
Sbjct 881 AATTTCAACCCTCAAAAG-TACCTGAGGATAGTTAAAACAGCGGGACTGGAGATATCTCA 939
Query 678 ACCGGCTTTGGATC-ATAACTCAACTGAAATCCACCATAAAATCACACTCCGTTCTAGGA 736
|||||| ||| | | | |||||||||||| | ||||||| ||| ||| |||| ||||| |
Sbjct 940 ACCGGCCTTGCACCCA-AACTCAACTGAAGTTCACCATAGAATTACAGTCCGGTCTAGAA 998
Query 737 CAAAGAA-ATTTCATAGGAGAGTTTAC-ATCAATAGAGGCCATA--AAAGGTGTTCTAAT 792
| || || |||||||||| |||||||| || | ||||||| ||| ||| ||||| |||
Sbjct 999 CGAA-AATATTTCATAGGCGAGTTTACGAT-AGTAGAGGCAATATGAAA--TGTTCAAAT 1054
Query 793 ACTAGTGCAGATCCTCCTTGCACCGGATTTGTTGAAGGAATGGCTCCGGTGTTTTCGAAA 852
|||||| || || || ||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 1055 GCTAGTGAAGGGCCCCCATGCACAGGATTTGTTGAAGGAATGGCTCCAGTGTTTTCGAGA 1114
Query 853 GCTGCTTGGTTTTGCACTTGGAATCTTATACAGAATGATTTGGTTCATGGATGGGGAATG 912
|||| |||||||||||||||||||| ||||| |||||| |||||||||| |||||||||
Sbjct 1115 TCTGCATGGTTTTGCACTTGGAATCTAATACAAAATGATCTGGTTCATGGTTGGGGAATG 1174
Query 913 GATATGAAACTTGGGTACTGCGCACAGGGAGACCGAA-CGAA-AAACGTAGGGATTGTGG 970
|||||||||||||| ||||| || ||||| ||||| | | || ||| ||||| ||||| |
Sbjct 1175 GATATGAAACTTGGATACTGTGCTCAGGGTGACCGTAGC-AAGAAA-GTAGGCATTGTCG 1232
Query 971 ATAGTGAGTATATCGTTC-ATCAAGGCATTCAAACTTTAGGTGAAAGTG-TT--CCTGAA 1026
| ||||| |||||| ||| |||||||||||||||| |||||| ||| | || || ||
Sbjct 1233 ACAGTGAATATATC-TTCCATCAAGGCATTCAAACACTAGGTGGAAGCGGTTATCCCGAT 1291
Query 1027 AAGAAGA-C-CA-CT-GC-GCGTGATGTTAGGGCCAGGAGACACAGC-CATACAACCTTT 1080
||||||| | || || || ||| || || | ||||||| | | | | | || |||
Sbjct 1292 AAGAAGAACTCAGCTCGCAGCG-GA-GTAAAT---AGGAGACGCGGTTC-TGCGACTTTT 1345
Query 1081 GATTCAAGAACCGAGATAAGGAGACAATCGACATGGGAGCTTCAAACTTTTAAAGAACGA 1140
||||||||||| |||||| |||||||||| || |||||||| ||| |||||||||||||
Sbjct 1346 GATTCAAGAACAGAGATACGGAGACAATCAACGTGGGAGCTGCAAGCTTTTAAAGAACGG 1405
Query 1141 TGGAGCAAAGCGGTAGAAGAAGACAA-TAACTGG 1173
|||| | ||||||| | ||||||||| || ||||
Sbjct 1406 TGGAACCAAGCGGTTGCAGAAGACAAATA-CTGG 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5