BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910868
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11185.1 | Symbols: | other RNA | chr1:3749510-3750035 FORW... 366 4e-101
> AT1G11185.1 | Symbols: | other RNA | chr1:3749510-3750035 FORWARD
LENGTH=526
Length=526
Score = 366 bits (198), Expect = 4e-101
Identities = 233/249 (94%), Gaps = 6/249 (2%)
Strand=Plus/Plus
Query 3 GGTGGAGATGGAACAAGAAAAGGTGGTAGAGAACACATTAGCCGTCCGATCCCGAAGAGA 62
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 125 GGTGGAGATGGAACTAGAAAAGGTGGTAGAGAACACAGTAGCCGTCCGATCCCGAAGAGA 184
Query 63 GGGCAAGTCAAAGTTGGGATCTTGCTTGGCTTTGCTAATTCCTTTGCTTCCATCTTTGGC 122
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 185 GGGCAAGTCAAAGTTGGGATCTTGCTTGGTTTTGCTAATTCTTTTGCTTCCATCTTTGGC 244
Query 123 TCCACGAGAAACTTCCATGGATCCTAAACCTAATCTGCTG-CTTTTCATTTCCCACAGAA 181
|| |||||||||||||||||||||||||| |||||| || ||| |||||||||||||||
Sbjct 245 TCAACGAGAAACTTCCATGGATCCTAAACTTAATCTTCTATCTTCTCATTTCCCACAGAA 304
Query 182 ATATTTTCATTTA-TTTTTCAGAATTTTCTGTGGTTTATTGGAGTGAGATAA--T-GGTG 237
||||||||||| | ||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 305 ATATTTTCATTCACTTTTT-AGAATTTTCTGTGGTTTATTGGAGTGAGATAAGATTGGTG 363
Query 238 ATCTTGTAG 246
|||||||||
Sbjct 364 ATCTTGTAG 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11159440278
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5