BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg910868 Length=246 Score E Sequences producing significant alignments: (Bits) Value AT1G11185.1 | Symbols: | other RNA | chr1:3749510-3750035 FORW... 366 4e-101 > AT1G11185.1 | Symbols: | other RNA | chr1:3749510-3750035 FORWARD LENGTH=526 Length=526 Score = 366 bits (198), Expect = 4e-101 Identities = 233/249 (94%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 3 GGTGGAGATGGAACAAGAAAAGGTGGTAGAGAACACATTAGCCGTCCGATCCCGAAGAGA 62 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 125 GGTGGAGATGGAACTAGAAAAGGTGGTAGAGAACACAGTAGCCGTCCGATCCCGAAGAGA 184 Query 63 GGGCAAGTCAAAGTTGGGATCTTGCTTGGCTTTGCTAATTCCTTTGCTTCCATCTTTGGC 122 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 185 GGGCAAGTCAAAGTTGGGATCTTGCTTGGTTTTGCTAATTCTTTTGCTTCCATCTTTGGC 244 Query 123 TCCACGAGAAACTTCCATGGATCCTAAACCTAATCTGCTG-CTTTTCATTTCCCACAGAA 181 || |||||||||||||||||||||||||| |||||| || ||| ||||||||||||||| Sbjct 245 TCAACGAGAAACTTCCATGGATCCTAAACTTAATCTTCTATCTTCTCATTTCCCACAGAA 304 Query 182 ATATTTTCATTTA-TTTTTCAGAATTTTCTGTGGTTTATTGGAGTGAGATAA--T-GGTG 237 ||||||||||| | ||||| |||||||||||||||||||||||||||||||| | |||| Sbjct 305 ATATTTTCATTCACTTTTT-AGAATTTTCTGTGGTTTATTGGAGTGAGATAAGATTGGTG 363 Query 238 ATCTTGTAG 246 ||||||||| Sbjct 364 ATCTTGTAG 372 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11159440278 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5