BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910871
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11210.1 | Symbols: | Protein of unknown function (DUF761) ... 1386 0.0
> AT1G11210.1 | Symbols: | Protein of unknown function (DUF761)
| chr1:3755677-3756998 REVERSE LENGTH=1213
Length=1213
Score = 1386 bits (750), Expect = 0.0
Identities = 876/936 (94%), Gaps = 12/936 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCATGGATGAAGGCGGTGCTAATCTCTACTGGTTTCGTAGCCACGGCTATGCAT 60
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 88 ATGGCGTCGTGGATGAAAGCGGTGCTAATCTCTACTGGCGTCGTAGCCACGGCTATGCAT 147
Query 61 CTAAAGGTTATTGTTCCTGTGGCTTTAGATTTCTCACTCGATCCGATTATTTTGAGCTCT 120
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 148 CTAAAGGTTATTGTTCCTGTGGCTATGGATTTCTCACAAAATCCGATTATTTTGAGCTCT 207
Query 121 TTCCTCACGTGGCTGAAACCGCCGTATCTTTACGTCATCACCAACGTCATCATCATCGTT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 208 TTCCTCACGTGGCTGAAACCGCCGTATCTTTACGTCATCACTAACGTCATCATCATCGTT 267
Query 181 ATCGGAGTTTCTTACCGGATTACTACTGTCTCCAGCCACGTCGACGGCAAAGACTACGAG 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 268 GTCGGAGTTTCCTACCGGATTACTACTGTCTCCAGCCACGTCGACGGCAAAGACTATGAG 327
Query 241 GCTTCTTACAGTGGCGACAATAAGTTTCAGACTGATCATCAGCAGATCGTCGAACG-ACC 299
||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 328 GCTTCTTACAGTGGCGACAATAAGTTTCAGACTGATCATCAGCAGATCGTCCAA-GAAGC 386
Query 300 TACTCTCCGACAG-CGGACGGAGACGAAAGATGCGGATTTTGGTTTCATCGGCAAAGTTT 358
| |||| | | | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 TCCTCTAAGGC-GACGAACGGAGACGAAAGATGCGGATTTTGGTTTCATCGGCAAAGTTT 445
Query 359 TGCAGATCGTTAAGGAGCCGGAGGTTGTGTATGAAGAGAAGGAGAGGCCGGCGACGGTAG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TGCAGATCGTTAAGGAGCCGGAGGTTGTGTATGAAGAGAAGGAGAGGCCGGCGACGGTAG 505
Query 419 AGGGGGAGGTGGAGAAGAAGTGTTTAGTGGTGGTGAGCAAATCGGAAAATCAACCTCCGG 478
||| ||||| ||||||||||| || | |||||||||||||||||||||||||||||||
Sbjct 506 AGGAGGAGG---AGAAGAAGTGTATAATTGTGGTGAGCAAATCGGAAAATCAACCTCCGG 562
Query 479 TGGAGAAGCCTCTAGTTACGGCTAGAATCGGCCAAAAGAAACCGGTGGTTAAGACTACTC 538
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 563 TGGAGAAGCCTCTTGTTACGGCTAGGATCGGCCAAAAGAAACCGGTGGTTAAGACTACAC 622
Query 539 CAGCAGAAAGGAATTCCATGAGAGCGTTAAGAGTGGCGAAGCCGAAGCGGAACGAGACAT 598
|||||||||||||||| ||||||||||| ||||| ||||| ||||| || |||||||| |
Sbjct 623 CAGCAGAAAGGAATTCTATGAGAGCGTTGAGAGTTGCGAAACCGAAACGTAACGAGACGT 682
Query 599 TAGAGAATACGTGGAAGATGATTATGGAAGGCAACAAGTCAACGCTTCCGTTGACCAGTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TAGAGAATACGTGGAAGATGATTATGGAAGGCAACAAGTCAACGCTTCCGTTGACCAGTT 742
Query 659 ATTACAAGAGACCTGACACGTTCGGACTTGGTGGCGAAGAGACAAAACTATCTGGTGGTT 718
||||||||||||| ||||||||||||||||| |||||||||||||| ||| |||| ||
Sbjct 743 ATTACAAGAGACCCGACACGTTCGGACTTGG---CGAAGAGACAAAACAATCAGGTGTTT 799
Query 719 TGAAGAAATCGGAGTCGTTTAGTGACAGAACTAA-TAGTGACCAGTCTCTGCCGTCGCCA 777
|||||||||||||| ||||||||||||||||||| | || |||||||||||||| |||||
Sbjct 800 TGAAGAAATCGGAGACGTTTAGTGACAGAACTAACT-GTTACCAGTCTCTGCCGCCGCCA 858
Query 778 CCGCCGCCGCTAGTGAAGGTGAAGAAGGTGAAAGTGACTCGGAGTAGGGATGAGCTTAAC 837
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 859 CCTCCGCCGCTAGTGAAGGTGAAGAAGGTGAAAGTGTCACGGAGTAGGGATGAGCTTAAC 918
Query 838 CGGAGAGTAGAAGCGTTTATaaaaaaaTGCAACGACGAGAGGTTCGCGTCTATGAGACTG 897
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 919 CGGAAAGTAGAAGCGTTTATAAAAAAATGCAACGACGAGAGGTTCGCGTCGATGAAACTG 978
Query 898 GACAACGAAGTGGCTCGTCATGGTCTTTCGTATTAA 933
||||||||||||||||||||||||||||| ||||||
Sbjct 979 GACAACGAAGTGGCTCGTCATGGTCTTTCTTATTAA 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5