BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910877
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11270.1 | Symbols: | F-box and associated interaction doma... 235 5e-61
> AT1G11270.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:3785507-3786990 REVERSE LENGTH=1361
Length=1361
Score = 235 bits (127), Expect = 5e-61
Identities = 463/618 (75%), Gaps = 52/618 (8%)
Strand=Plus/Plus
Query 123 GAAAAGACTTTGCT-TGAGTCT-G-G-AATT-CT--TACCACACGATCTTGTAGAGCTCA 175
|||||||| ||||| | ||| | | | |||| || ||||||||||| |||| | |||||
Sbjct 283 GAAAAGACATTGCTCT-AGTGTGGTGAAATTGCTGCTACCACACGATGTTGTTGGGCTCA 341
Query 176 TCCTCCAGAGACTTCCTGTGAAACCTCTGCTGAGATTCAAGT-CTGTATCCAAGAACTGG 234
||||| |||||||||||||| | |||||||||||||||||| | |||||||| | |||
Sbjct 342 TCCTCGAGAGACTTCCTGTGGAGTCTCTGCTGAGATTCAAGTGC-GTATCCAACCAGTGG 400
Query 235 AAATCGACAATCGAGTCCCAACGGTTCCAAGAAGGAAACTTGATCTGTAGTA-GGCAAG- 292
||||| |||||||||||||| | || |||||| || | |||||| || ||| || ||
Sbjct 401 AAATCCACAATCGAGTCCCAGTGTTTTCAAGAACGACAGTTGATCCGTCGTATGG--AGT 458
Query 293 CTCTAGGTCCAGATGTTCTTTTGGTGTCCCTCTGTGAAAAAGGTGATGCT-GGTCTGAGC 351
| | |||||| ||||||||| | |||| ||| | || | | ||| | | || | |
Sbjct 459 CCCGAGGTCCTGATGTTCTTGTAGTGT-CCT-T-TGCTGATGATGAAGATAAGTAT--G- 512
Query 352 GGACATGCACGAACAGTTATGTTCAGTTTAG-CAACAGCTTCTAAGGTT-AGGTTCCCTT 409
|| | | | || || | |||| | || | | | || |||| | ||| || ||||| |
Sbjct 513 GG--A-G-A--AA-AGCTGTGTT-TGGTTCGTCCATAGTTTCT-ACGTTCAGATTCCC-T 562
Query 410 TTTC-GGGTAGCATGTTCTGCTATGGTCA-TTGTGACGGTCTAG-TATGTTTCTACTGTG 466
|| | | | || ||||||||||| | |||||| ||||| | |||| |||||||||
Sbjct 563 ACTCTGCACACCTTGATCTGCTATGGT-AGTTGTGAAGGTCT-GATATGCATCTACTGTG 620
Query 467 TCTA-TGCACCGAGTTTCGTGATGAATCCCGCCACTAAATGGCATCGAAGTTTTCCTCTT 525
| || | |||||| | ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 621 TTTACT-CACCGAATATCGTGGTGAATCCCGCCACTAAATGGCATCGAAGTTGTCCTCTT 679
Query 526 TCCGGCTAT-CAGCAGTTGGTC-ATCGAGAGGTAC-AACAGGTTATATTTTAAATTCATA 582
||| || | || ||||| || | ||| | | || || | | | | | ||| |
Sbjct 680 TCCAACT-TGCAACAGTTCCTCGA-CGACAAATTTGAAAAGAA-AGAGTATGACTTCCCA 736
Query 583 AGTTTTAAGCTTGGACTCGGTAGGGACAAATTCAGGGGCACATACAAGGC-GGTTTGGTT 641
| | ||| |||| | |||||| |||||| ||| |||||||| ||| | |||||||||
Sbjct 737 ACTCCTAAACTTGCATTCGGTAAAGACAAACTCAATGGCACATATAAG-CAGGTTTGGTT 795
Query 642 ATATAGTTCATCCGAGTA-CGGACTAGACAACGTTACCACTTGTGA-GCTTTTCGATTTT 699
||||| ||||||||||| || || ||| ||||||| |||||||| | |||||||||||
Sbjct 796 ATATAATTCATCCGAGTTTCGC-CTCGACGACGTTACAACTTGTGAAG-TTTTCGATTTT 853
Query 700 AGTACCAACGCTTGGAGG 717
|| | ||| |||||||||
Sbjct 854 AGCAACAATGCTTGGAGG 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5