BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910891
Length=2502
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11350.1 | Symbols: CBRLK1, SD1-13, RKS2 | S-domain-1 13 | c... 1325 0.0
> AT1G11350.1 | Symbols: CBRLK1, SD1-13, RKS2 | S-domain-1 13 |
chr1:3817591-3820805 REVERSE LENGTH=2680
Length=2680
Score = 1325 bits (717), Expect = 0.0
Identities = 1020/1165 (88%), Gaps = 25/1165 (2%)
Strand=Plus/Plus
Query 1353 TTTTG-TCGCTGTGATTGTTCTCTTAGCACTGCGAAAGTTGGCAAAGCATAGAGAGAAAA 1411
||||| | || | || |||| ||||||||||| | ||| | || |||||||||||||| |
Sbjct 1390 TTTTGTTTGCAGGGACTGTTGTCTTAGCACTGTGGAAGATCGCTAAGCATAGAGAGAAGA 1449
Query 1412 ACAGAAACACAAGGGTACTGT-TTGAGAGGATGGAAGCTTTAAATAATAACGA-GTCTGG 1469
|||||||||||||| |||| | |||||| ||||||||||||| || ||| || || |||
Sbjct 1450 ACAGAAACACAAGGCTACT-TAATGAGAGAATGGAAGCTTTAAGTAGTAATGACGT-TGG 1507
Query 1470 AGCAATACGTGTGAATCAAAACAAGCTTAAAGAGCTACCATTGTTCGAGTAT-CAAATGT 1528
||||| | |||||||||| |||||||||||||||||||| ||||||||| | ||| |||
Sbjct 1508 TGCAATCCTTGTGAATCAATACAAGCTTAAAGAGCTACCACTGTTCGAGT-TCCAAGTGT 1566
Query 1529 TAGCTGCAGCAACTGAA-AATTTCGCTATCACAAACAAGCTCGGGGAAGGAGGCTTTGGT 1587
|||| | || || || ||||| ||||||||||||||||||| ||||||| ||||||
Sbjct 1567 TAGCAGTGGCGAC-CAACAATTTTTCTATCACAAACAAGCTCGGACAAGGAGGATTTGGT 1625
Query 1588 TCCGTTTACAAGGGGAAATTACGAGAAGGGCAAGAGATCGCTGTGAAGAGGCTCTCACGA 1647
| ||||||||||||| |||| |||||||| || ||||||||||||||||| || |||
Sbjct 1626 GCTGTTTACAAGGGGAGGTTACAAGAAGGGCTCGATATCGCTGTGAAGAGGCTTTCGCGA 1685
Query 1648 ACGTCTGGACAAGGACTCGAAGAGTTTGTGAATGAGGTGGTCGTGATCTCTAAGTTGCAA 1707
|| || ||||||||| |||| |||||||||||||| |||||||||||||| ||| |||||
Sbjct 1686 ACATCGGGACAAGGAGTCGAGGAGTTTGTGAATGAAGTGGTCGTGATCTCAAAGCTGCAA 1745
Query 1708 CACCGGAACCTCGTCAGATTGCTTGGATTCTGCATAGAAGGAGAAGAAAGGATGCTGGTC 1767
|||||||| ||||| ||||||||||| |||||||| ||||||||||| |||||| |||||
Sbjct 1746 CACCGGAATCTCGTGAGATTGCTTGGTTTCTGCATTGAAGGAGAAGAGAGGATGTTGGTC 1805
Query 1768 TATGAGTTTATGCCAGGA-AATTCTTTGGATGCATATCTATTTGACCCGGTGAAGCAAAG 1826
|||||||| |||||| || |||| ||| || |||||||||||||||||||||||||||||
Sbjct 1806 TATGAGTTCATGCCA-GAGAATTGTTTAGACGCATATCTATTTGACCCGGTGAAGCAAAG 1864
Query 1827 ACTTCTTGACTGGAAGACGCGGTTTAACATAATCGATGGGATTTGCAGAGGTCTGATGTA 1886
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1865 ACTTCTTGACTGGAAGACGCGGTTTAACATAATCGATGGGATTTGCAGAGGTCTTATGTA 1924
Query 1887 CCTTCACAGAGATTCAAGACTGAGGATCATACATAGAGATCTAAAGGCCAGCAATATCTT 1946
|||||||||||||||||| |||| ||||||||| ||||||||||| || |||||||| ||
Sbjct 1925 CCTTCACAGAGATTCAAGGCTGAAGATCATACACAGAGATCTAAAAGCAAGCAATATTTT 1984
Query 1947 GTTAGATGAAAATCTAAACCCGAAGATATCTGATTTTGGGCTCGCCAGAATTTTCCGGGG 2006
||||||||| |||||||||||||||||||| || |||||||| || || ||||||| |||
Sbjct 1985 GTTAGATGAGAATCTAAACCCGAAGATATCCGACTTTGGGCTGGCTAGGATTTTCCAGGG 2044
Query 2007 GAATGAAGATGAAGCAAGCACCCTAAGAGTGGTTGGAACATACGGTTATATGGCACCCGA 2066
|||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2045 GAATGAGGATGAAGTAAGCACCGTAAGAGTGGTTGGAACATACGGTTATATGGCACCCGA 2104
Query 2067 ATACGCACTGGGAGGGTTATTCTCGGAGAAATCCGATGTTTTCAGCTTAGGAGTCATACT 2126
||| ||| |||||||||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct 2105 ATATGCAATGGGAGGGTTGTTCTCAGAGAAATCTGACGTTTTCAGCTTAGGAGTCATACT 2164
Query 2127 CTTAGAGATTGTGAGTGGGAGAAGAAACTCAAGCTTCTACAATGATGAGCAGAATCTAAA 2186
|||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| |||
Sbjct 2165 CTTAGAGATTGTGAGTGGAAGAAGAAACTCAAGCTTTTACAATGATGGGCAGAATCCAAA 2224
Query 2187 TCTTTCAGCTTATGCATGGAAACTATGGAACGAT-GGGGAA-ATTATCGCTCTTGTGGAT 2244
|||||||||||||||||||||||| |||||| | |||||| || || ||||||||||||
Sbjct 2225 TCTTTCAGCTTATGCATGGAAACTCTGGAAC-ACCGGGGAAGAT-ATTGCTCTTGTGGAT 2282
Query 2245 CCAGTCAACCTTGACGAGTGTTTTGCAAATGAAATACGCAGATGCGTGCACATAGGACTG 2304
|| |||| | |||| |||||||||| |||||||||||||||||| |||||| |||||||
Sbjct 2283 CCGGTCATCTTTGAAGAGTGTTTTGAAAATGAAATACGCAGATGTGTGCACGTAGGACTA 2342
Query 2305 TTGTGTGTACAAGATCATGCAAATGATAGACCGAGCGT-GTCAACCGTGATTTGGATGCT 2363
||||||||||||||||| ||||||||||| |||||||| | |||| ||||||||||||||
Sbjct 2343 TTGTGTGTACAAGATCACGCAAATGATAGGCCGAGCGTTG-CAACGGTGATTTGGATGCT 2401
Query 2364 TAAC-AGTGAAAATTCAAACCTTCCCGAGCCAAAGCAACCCGCATTTATAGCTAGAAGGG 2422
|| || || || ||||||||||| |||||||||||||| ||||||||| |||||||||
Sbjct 2402 -AAGTAGCGAGAACTCAAACCTTCCAGAGCCAAAGCAACCTGCATTTATACCTAGAAGGG 2460
Query 2423 GCTCTCCAGACGCTGAATC------ACAAAGTGACCAAAGAGCATCCATCAACAATGCGA 2476
|| || |||| | |||||| |||||| |||| ||||||||| |||||||||| ||
Sbjct 2461 GCACTTCAGAAGTTGAATCCTCGGGACAAAGCGACCCAAGAGCATCGATCAACAATGTGA 2520
Query 2477 GCTTCACAGAAATCACTGGACGTTA 2501
|| ||||| |||| || ||||||||
Sbjct 2521 GCCTCACAAAAATAACAGGACGTTA 2545
Score = 881 bits (477), Expect = 0.0
Identities = 1035/1295 (80%), Gaps = 75/1295 (6%)
Strand=Plus/Plus
Query 14 TTCTTATTGTTACATTGTCTTT-CTTCTCTTTGA-GATTATGTTTGGCTGGGGATGTTGT 71
||||| || |||||||| ||| ||| || |||| | || ||||||||| ||||| |
Sbjct 70 TTCTTCTTCTTACATTG-ATTTGCTTTTCCTTGAGGCTT-TGTTTGGCTACTGATGTAAT 127
Query 72 CTCGTTCTCTACCGAGCTCAAGGACTCGGAAAC-GCTCGTCTCCGATCGCAGCACTTTCA 130
| |||| |||| |||| ||| |||||| || || | |||||||| | | |||||| ||||
Sbjct 128 CACGTTTTCTAGCGAGTTCAGGGACTCTGAGACTG-TCGTCTCCAACCACAGCACCTTCA 186
Query 131 GGTTTGGTTTTTTCAGTCCAGTTAACTCCACGA-GTCGCTACGCAGGGATATGGTTCAAT 189
|||||||||| ||||| || ||||||||||| | | || || ||||||||||||||||||
Sbjct 187 GGTTTGGTTTCTTCAGCCCGGTTAACTCCAC-AGGACGTTATGCAGGGATATGGTTCAAT 245
Query 190 AAAATTTCTGCAGTGGC-TTCCATGGTTTGGGTAGCAAACAG-AGGCAGCCCTATCAATG 247
|| | ||| | || | || ||||||||||||||||||| | |||||| |||||||
Sbjct 246 AATA-TTC--CTGT-TCAAACCGTGGTTTGGGTAGCAAACAGTA-ACAGCCCGATCAATG 300
Query 248 ACTCTTCTGGAGTGATTGT-GATAGCCAAAGACGGGAATCTCG-TGATTAAGGACGGTCG 305
||||||| ||| || || | ||| |||| || |||||||| | || ||| ||| |||||
Sbjct 301 ACTCTTCCGGAATGGTT-TCCATATCCAAGGAAGGGAATCTTGTTG-TTATGGATGGTCG 358
Query 306 CGGACATGTTCACTGGTCCACGAATGTCTCACAACCAGTAGCTGCTAACACC-ACATATG 364
|||||| |||||||||||||| ||||||| || || |||||||||||| | ||||
Sbjct 359 CGGACAGGTTCACTGGTCCACCAATGTCTTGGTGCCGGTGGCTGCTAACACCTTC-TATG 417
Query 365 CAAGGCTT-CTGAATACAGGGAACCTCGTACTGCAAGGAATTTCAAACAGTGGGGATAAG 423
| || || |||||||||||||||||||| |||| ||||| | | || | ||||||| ||
Sbjct 418 CCCGG-TTGCTGAATACAGGGAACCTCGTGCTGCTAGGAACTACTAATACTGGGGATGAG 476
Query 424 ATTCTGTGGGAGAG-TTTCGAGCATCCTC-AAA-ATGCATTCATGCCAACAATGA-TACT 479
||||| |||||||| ||| |||||||||| ||| || ||| |||||||||||| | ||
Sbjct 477 ATTCTTTGGGAGAGCTTT-GAGCATCCTCAAAACATATATT--TGCCAACAATGAGT-CT 532
Query 480 TTCTACTGATGC-AAGAACGGGAAGGAGCCTTAAGCTTAGATCGTGGAATAA--CCGTTC 536
| ||||||| | || ||| || |||||||||||||| ||||| ||||| || |||||
Sbjct 533 TGCTACTGACACGAA-AACAGGCAGGAGCCTTAAGCTAAGATCTTGGAA-AAGCCCGTT- 589
Query 537 TGATCCTTCGCCTGGACGCTACTCTGCTGGTATGATTTCTCTACCATTTCCGGAGCTTGC 596
|||||| ||||||||||| |||||||| ||| ||||| |||| |||||||| || ||||
Sbjct 590 TGATCCATCGCCTGGACGATACTCTGCAGGTTTGATTCCTCTGCCATTTCCAGAACTTGT 649
Query 597 CATCTGGAAAGATGATCTTATGGTGTGGCGTAGCGGCCCGTGGAATGGTCAATACTTTAT 656
||||||||||||||||| || ||||||||||||| || ||||||||||||||||| ||
Sbjct 650 TGTCTGGAAAGATGATCTTCTGATGTGGCGTAGCGGTCCATGGAATGGTCAATACTTCAT 709
Query 657 TGGACTACCAGAAT-TGGATTTCGGTGTCAGTCTTTACGAGTTTACCC-TAGCTAATGAC 714
||| ||||| ||| |||||| | || ||| ||||| |||||| |||| ||| || ||||
Sbjct 710 TGGGTTACCA-AATATGGATTACCGTATCAATCTTTTCGAGTTAACCCTTAG-TAGTGAC 767
Query 715 AACCGAGGATCCGTCTCCATGTCATATACT--AATTATGAC-TCGCTGTATCATTTTTTC 771
|| |||||||| ||||||||||| ||| || || || || | | ||||||||||| ||
Sbjct 768 AATCGAGGATCTGTCTCCATGTCCTATGCTGGAA--AT-ACTTTGTTGTATCATTTTCTC 824
Query 772 TTGGACTCCGACGGGTATGCG-G-TGGAGAAATACTGGAGCGAAGTTAAGCAAGAATGGA 829
||||||||||| || | ||| | | ||| | | |||| || | || ||||||||||
Sbjct 825 TTGGACTCCGA-AGG-AAGCGTGTTTCAGAGAGATTGGAACGTGGCTATCCAAGAATGGA 882
Query 830 GGACCGGGATACTA-TTTCCATC-A--AATTGTGATATATATGGTAAATGTGGCCAATTC 885
|||| || || | | ||||| | || ||||||| ||| | | |||||||||||||
Sbjct 883 AGACCTGGTTA-AAGGTCCCATCGACCAAGTGTGATACATACGCCACATGTGGCCAATTC 941
Query 886 GCCAGTTGC-----CAATCCCGGTTAGA-TCCACCTTGCAAGTGCATTAGAGGGTTTGAC 939
|| |||||| ||||||||| | || ||| ||||||| |||||||||||||||| |
Sbjct 942 GCTAGTTGCAGATTCAATCCCGGGTCGACTCCGCCTTGCATGTGCATTAGAGGGTTTAAG 1001
Query 940 CCGCGGAGTTATGCAGAGTGGAACAGA-GGAAACTGGACTCAGGGATGCGTAAGAAAGAG 998
|| | |||||| || |||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 1002 CCACAGAGTTACGCGGAGTGGAACA-ACGGAAACTGGACTCAGGGATGCGTAAGAAAG-G 1059
Query 999 G-CCGTTGCAGTGTGAGAGACGAGACAGTAA---TGGAAGTAGAGAGGGTGATGGGTTTT 1054
|| |||||||| || || ||||||| || |||||||||| | ||||||| |||
Sbjct 1060 CACCATTGCAGTGCGAAAGTCGAGACAACAACGATGGAAGTAGAAAAAGTGATGGATTTG 1119
Query 1055 TGAGATTGAAAAAGATGAAAGTGCCCAACAATCCACAGCGATCTGAAGTCAGCGAACAAG 1114
||||| || ||||||||||||||||| |||||||||| ||||||| || || |||||||
Sbjct 1120 TGAGAGTGCAAAAGATGAAAGTGCCCCACAATCCACAACGATCTGGAGCCAATGAACAAG 1179
Query 1115 AATGTCCTG-GAAGCTGTCTGAAAAACTGTTCTTGTACGGCTTACTTTTATGGCCA-AGG 1172
| ||||||| || |||||||||| |||||||||||||||||||||| | | | || |||
Sbjct 1180 ACTGTCCTGAGA-GCTGTCTGAAGAACTGTTCTTGTACGGCTTACTCAT-TCGACAGAGG 1237
Query 1173 GATGGGTTGTCTTCTCTGGAGTGGAAACTTGATCGATATGCAGGAGTATG-TGGGCTCTG 1231
||| ||||||||||| ||||| ||||||||||| ||||||||||||| | ||| | |||
Sbjct 1238 GATTGGTTGTCTTCTTTGGAGCGGAAACTTGATGGATATGCAGGAGTTTTCTGG-CACTG 1296
Query 1232 GCGTTCCTCTTTACATCCGGCTGGCAGGTTCAGAG 1266
|||| | ||||||| || || |||| |||||||
Sbjct 1297 GCGTGGTTTTTTACATTCGTCTTGCAGATTCAGAG 1331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124163183925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5