BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910897
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11420.1 | Symbols: ATDUF2, DUF2 | DOMAIN OF UNKNOWN FUNCTIO... 1698 0.0
AT2G47220.1 | Symbols: DUF5, ATDUF5 | DOMAIN OF UNKNOWN FUNCTIO... 579 4e-164
> AT1G11420.1 | Symbols: ATDUF2, DUF2 | DOMAIN OF UNKNOWN FUNCTION
724 2 | chr1:3844581-3846872 REVERSE LENGTH=1815
Length=1815
Score = 1698 bits (919), Expect = 0.0
Identities = 1574/1875 (84%), Gaps = 106/1875 (6%)
Strand=Plus/Plus
Query 1 ATGGAGCAAATGGTATTTATTAGAAAAGACTG-TAAAGTAGAAGTTTATTGTGAAG-AG- 57
|||||||| ||| |||| |||||||||||| | ||||||||||||| || ||||| ||
Sbjct 1 ATGGAGCAGATGATATTCATTAGAAAAGAC-GACAAAGTAGAAGTTTTTTCTGAAGAAGA 59
Query 58 -GAGTTTAAAGAGTCTTGGTACAGAGCGATTCTGGAAGATGACCCAACGGAATCAGGACG 116
||||| |||| ||||| ||||||||||||||||||||| | |||||| |||||||||
Sbjct 60 AGAGTTAAAAGGGTCTTATTACAGAGCGATTCTGGAAGATAATCCAACGAAATCAGGACA 119
Query 117 CAAAAAGCTTAAAGTTCGTAACTTGACGCTGCTCGAT-AAGGACC-CTTGGTCTCCTCTA 174
||| ||||||||||||||| ||||||||| |||| || || ||| |||| ||||| ||
Sbjct 120 CAATAAGCTTAAAGTTCGTTACTTGACGCAGCTCAATGAA-CACCGTTTGG-CTCCTTTA 177
Query 175 ACGGAATTCGTCGATCAGAGCTTAATTCGACCTGTCCCACCGGAGGATCTGAACGACGGC 234
|||||||||||||||||||| || ||||| |||||||| |||||||| |||||||||||
Sbjct 178 ACGGAATTCGTCGATCAGAGGTTCATTCGTCCTGTCCCGTCGGAGGATGTGAACGACGGC 237
Query 235 GTCGTTTTTGAAGAAGGTTTGATGGTCGACGCTTATCTCAAAGATGGGTGGTGGACTTGT 294
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 238 GTCGTTTTTGTAGAAGGCTTGATGGTCGACGCTTATCTCAAAGATGGGTGGTGGACTGGT 297
Query 295 GTGGTAATCAAAACATTGGAGGATGAGAAATGTTGGGTTTATTTCGATTCCCCACCAGAC 354
||||| | |||||| ||||||||||||| | || |||||| ||||||| ||||||||||
Sbjct 298 GTGGTGGTAAAAACAATGGAGGATGAGAAGTTTTTGGTTTACTTCGATTGCCCACCAGAC 357
Query 355 ATCATTGAGGTTGAGAATAAGAAATTGAGGGTTCATCTCGATTGGACCGGCTTCAAATGG 414
|| ||| || ||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 ATTATTCAGTTTGAGAAAAAGAAATTGAGGGTTCATCTTGATTGGACCGGCTTCAAATGG 417
Query 415 GTCCGACCTGATAATAAGGAATTGGTCAAGTCTGTTGTTTATAGTTGCGGGACAATGGTG 474
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 418 ATCCGACCTGATAATAAGGAATTGGTCAAGTCTGTT-TTTA--GTTGCGGGACAATGGTG 474
Query 475 GAATTGAGACTGGGTTTTGATTGGCTTCCGGTAACTGTCATTAAGGAGTTGGAGAATGGG 534
||||||||| | | || || |||| ||||||||| ||||||||||||||||||||| ||
Sbjct 475 GAATTGAGATTTGATTGTGCTTGGATTCCGGTAATTGTCATTAAGGAGTTGGAGAA-GGA 533
Query 535 -AAGAGGTTTATTGTCAAGCACTGGGATAAGTCCT-TCACCTGCAGAGAGGAATC-AGGA 591
||||||||| |||||||| ||||| ||||||||| | | |||| | | | |||| | |
Sbjct 534 CAAGAGGTTTCTTGTCAAGTACTGGAATAAGTCCTAT-AGCTGCCG-G-G-AATCGAAAA 589
Query 592 ATCATAACCGTTGATTCCCTTAGTGTCAGGCCTAAGCAGCCTCCTTTTTCTGTCGGAGGG 651
|| ||| ||||||||||| || | ||||||| |||||||||||| ||||| ||| |
Sbjct 590 ATT-TAATTGTTGATTCCCTAAGACTAAGGCCTATGCAGCCTCCTTTATCTGTTGGAAAG 648
Query 652 TTTGATTTGTTGGATCATGTAGAGGTGTTTAGTCATTTTGAATGGCGTCAAGGTGTGGTG 711
| ||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 649 TATGAATTGCTGGATCATGTAGAGGCGTTTAGTGGTTTTGAATGGCGTCAAGGTGTGGTC 708
Query 712 AGGGGAATTGTCTTTGAGGGACGATACATGGTAAGTTTCGGGGCAACAAGGGCCGCGTCG 771
||||||||||||||||||||| | ||||||||||||||||||||||||| || || |||
Sbjct 709 AGGGGAATTGTCTTTGAGGGAAGGTACATGGTAAGTTTCGGGGCAACAAAGGAGGCATCG 768
Query 772 CAATTCAGTCATTCAGATCTTAGGCCTCCAATGGAGTGGAAAGATGGAGTTTGGCATAAA 831
||||| | ||| || ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 769 CAATTTAATCACTCTGATATTAGGCCTCCAATGGAGTGGGAAGATGGAGTTTGGCATAAA 828
Query 832 ATAACAAAGCCAAAAGGTCaaaaaaaaaCTTCTTTAGACGGCAAAAGAAACAAGTCAGTG 891
| ||||||||||||| | || ||| ||||||||||||||||||| ||||| | |||
Sbjct 829 AGAACAAAGCCAAAACGCCAGAAAGAAACTTCTTTAGACGGCAACAGAAA----T--GTG 882
Query 892 GCTTTGGACACTGGAAATGTGCAGACAAAGGAACTGCCGGGAAATGGGATGGCTAACGAT 951
| | ||| || | | | || | | | |||||||| ||||||| | |||
Sbjct 883 -CA--G-ACA----AA--G-G-A-ACCA-----C--C-GGGAAATGAGATGGCTGATGAT 921
Query 952 GTAGTAAATGAAAAAGGATCTGGTTCACATATAACCCAGGGCATGACTGCAACAATGAAC 1011
|| | ||| ||| | |||||||| || |||||||| ||| | |||||||||| ||||
Sbjct 922 GT-G-AAA--AAAGA--ATCTGGTTTACCTATAACCCTGGGGGTAACTGCAACAAAGAAC 975
Query 1012 AAAACCCAGGGAAAGATATCCCCTGAGCCAATGAAGAATCAAATTGGCTCGAGAAATGAG 1071
|||||||| |||||| ||||||||| ||||||||||||| || | | ||||||||
Sbjct 976 AAAACCCAAGGAAAGGTATCCCCTGTGCCAATGAAGAATGGC-TT---T-G-GAAATGAG 1029
Query 1072 CCAACTCGAGAGAAGCAT---T-AC-AGCA-AAG-T----T-T-ACACTCGGAAGAGGAA 1118
|||||||||||||| || | | ||| ||| | | | | ||||| ||||||||
Sbjct 1030 TCAACTCGAGAGAAG-ATGCCTGAGGAGCCTAAGATCAAATATTATACTCGAAAGAGGAA 1088
Query 1119 GAGAGGACAACTAGAA-CACAATTCAGACCTCAATGAGACTGTGTTATCCTCAGATCGGA 1177
|||||| ||| || | ||||||| || ||||| |||||||||||||||| |||||||
Sbjct 1089 AAGAGGAGGTCTA-AAGCTCAATTCATACATCAATAAGACTGTGTTATCCTCGGATCGGA 1147
Query 1178 CCCCCAATGTGGTGAAGAATGT-TGGTTCTAATGTTGAGGAAAACCAAGCAAAGGATACA 1236
|||||||||||||||||||| | || |||||||| |||||||||||| ||||| | |||
Sbjct 1148 CCCCCAATGTGGTGAAGAAT-TCTGCTTCTAATGCTGAGGAAAACCATGCAAAACACACA 1206
Query 1237 GA-AATGGTTTTGCCTTTCGTGAAGAAGTCACCGTGT-TGGAAGA-TATATGAATCAACC 1293
| ||||||||||||||| | |||||||||||| || ||||||| | ||||||||| |
Sbjct 1207 -ATAATGGTTTTGCCTTTTGCAAAGAAGTCACCG-GTCTGGAAGACT-TATGAATCA-CT 1262
Query 1294 G-AGGTCTTCAAAAGAGTACCACAAAGTCCTCATTTCAGCCCATTATTAAAGAGTAAAG- 1351
| ||||||||||||| ||| |||| |||| ||||||||||||||| || ||| ||| |
Sbjct 1263 GGAGGTCTTCAAAAGTGTATCACACAGTCTTCATTTCAGCCCATTGTTTGAGACTAA-GC 1321
Query 1352 AAGATTTCCGTGAAGGGTATGCATTAGGTCTGATGGTGATTTATTCTGGGTTACTGGAGA 1411
||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||
Sbjct 1322 AAGATTTCCGTGAAGGGTATGCAATAGGTATGATGGTGACTTATTTTGGGTTACTGGAGA 1381
Query 1412 AATTTAAAGATCTTGAAACCGACGTTCCCCTAAGCCAACTACATAGCCTCAAAGATTCAT 1471
||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 1382 AATTTAAAGATCTTGAAGCCGACGTTCCTGTAAGCCAACTAAATAGCCTTAAAGATTCAT 1441
Query 1472 TTTCAGAGCTAGAGAAATACGGTTTCAGTGTTACAACGGCTTTATCACGGATCGACAAGC 1531
|||| ||||| |||||| | || |||| ||||||||| | |||||||||||||||||||
Sbjct 1442 TTTCGGAGCTCGAGAAACATGGCTTCAATGTTACAACTCCATTATCACGGATCGACAAGC 1501
Query 1532 TGTTGGCACTCAAAGATAGACAACTAAATATATTGGAGGAACTAAAAGGTTTTGACAAAG 1591
|||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct 1502 TGTTAGCACTCAAAGATAGACAACTATATATAATGGAGGAACTAAAAGGTTTTGACAAGG 1561
Query 1592 AGATGACGGATGAATATAGCA-G--TAATCGAA-AG---GCT-A-A---A-CAAGAGTTT 1638
||||||| |||||| ||||| | ||| | || || | | | | | ||| || ||
Sbjct 1562 AGATGACAAATGAATTTAGCAAGGCTAAAC-AAGAGTTTGATGACATGGAACAAAAGATT 1620
Query 1639 GATAAGATAGAA-CGA-AAGATTCTTGAGCTGCATAGGCAAGAAGCCGCTCTaaaaaaac 1696
| || | ||| | | |||||| | |||||||| ||||||||||| ||||||||| |||
Sbjct 1621 CTTGAGGT-GAAAC-ACAAGATTATCGAGCTGCAGAGGCAAGAAGCTGCTCTAAAAGAAC 1678
Query 1697 aaaaagaagcagcaaaagaacagaaagatgcagcctacaaaaagaTATGTCAGATGGAGT 1756
|||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1679 AAAAGGAAGCAGAAAAAGAACAGAAAGATGCAGCCTGGAAAAAGATATGTCAGATGGAGT 1738
Query 1757 CATGCGCAAAAGATCTTGATGTAGAGCTTGAAGGTGTGGAGTTTGAGTTTGAGACAATTT 1816
|||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1739 CATGTGCAAAAGATCTCAATGTAGAGCTTGAAGATGTGGAGTTTGAGTTTGAGACAATTT 1798
Query 1817 TGTCGGCTCCCTGGT 1831
|||||||||| ||||
Sbjct 1799 TGTCGGCTCCTTGGT 1813
> AT2G47220.1 | Symbols: DUF5, ATDUF5 | DOMAIN OF UNKNOWN FUNCTION
724 5 | chr2:19383743-19386954 FORWARD LENGTH=2062
Length=2062
Score = 579 bits (313), Expect = 4e-164
Identities = 612/752 (81%), Gaps = 38/752 (5%)
Strand=Plus/Plus
Query 1103 ACACTCGGAAGAGGAAGAGAGGACAACTAGAACACAATTCAGACCTCAATGAGACTGTGT 1162
||| ||| |||||||| |||||| |||| || || ||||| |||||||| |||||||||
Sbjct 1023 ACAGTCGTAAGAGGAAAAGAGGAGAACTGGAGCATAATTCGGACCTCAACGAGACTGTGC 1082
Query 1163 TATCCTCAGATCGGACCCCCAAT-GTGGTGAAGAATGTTGGTTCT-A--ATG-T--TGAG 1215
|| |||| ||| |||| ||| || | ||||||||| ||| | || | ||| | ||||
Sbjct 1083 TACCCTCTGATTGGACTCCCGATCCT-GTGAAGAATTTTGCTGCTGATGATGATGATGAG 1141
Query 1216 GAAAACC-AAGCAAAGGATACAGA-AATGGTTTTGCCTTTCGTGAAGAAGTCACC-GTGT 1272
| ||||| ||||||||||| || | ||||||| ||||||| |||||||||||||| || |
Sbjct 1142 G-AAACCAAAGCAAAGGATGCA-ACAATGGTTCTGCCTTTTGTGAAGAAGTCACCGGT-T 1198
Query 1273 TGGAAGATATATGAATCAACCGAGGTCTTCAAAAGAGTACCACAAAGTCCTCATTTCAGC 1332
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGGAAGATATATGAATCAATGGAGGTCTTCAAAAGAGTACCACAAAGTCCTCATTTCAGC 1258
Query 1333 CCATTATTAAAGAGTAAA-GAAGATTTCCGTGAAGGGTATGCATTAGGTCTGATGGTGA- 1390
||||| || | || ||| ||||||||||||||||| | ||| || ||| |||||||||
Sbjct 1259 CCATTGTTTGA-AGCAAAAGAAGATTTCCGTGAAGGTTTTGCTTTGGGTATGATGGTGAC 1317
Query 1391 TTTATTCTGGGTTACTGGAGAAATTTA-AAGATCTTGAAA-CCGACGTTCCCCTAAGCCA 1448
||| ||||||| || | || ||| | | ||||||| |||| ||||||||||| || ||||
Sbjct 1318 TTT-TTCTGGGGTATTAGAAAAAGT-AGAAGATCT-GAAAACCGACGTTCCCATACGCCA 1374
Query 1449 ACTACATAGCCTCAAAGATTCATTTTCAGAGCTAGAGAAATACGGTTTCA-GTGTTACAA 1507
|||| ||||||| ||||| |||||| | ||||||||||| | || |||| | || |||
Sbjct 1375 ACTAAATAGCCTTAAAGACTCATTTACCGAGCTAGAGAAGCATGGATTCACG-GTCACAG 1433
Query 1508 CGGCTTTATCACGGATCGACAAGCTGTTGGCACTCAAAGATAGACAACTAAATATATTGG 1567
|| ||||||| ||||||| ||||||||| || |||||||||||||||||||| |||||||
Sbjct 1434 CGCCTTTATCTCGGATCGCCAAGCTGTTAGCTCTCAAAGATAGACAACTAAAAATATTGG 1493
Query 1568 AGGAACTAAAAGGTTTT-GACAAAGAGATGACGGATGAATATAGCAGTAATCG-AAAGGC 1625
|||||||||||| |||| ||||||||||||| ||||||| ||||| || | |||| |
Sbjct 1494 AGGAACTAAAAG-TTTTCGACAAAGAGATGAAAGATGAATCTAGCAAAAAGCATAAAG-C 1551
Query 1626 TAAACAAGAGTTTGATAAGATAGAACGAAAGATTCTTGA-GCTGCATAGGCAAGAAGCCG 1684
| | |||||||||| | |||| ||||| ||||||||||| | || | | |||| | |
Sbjct 1552 TGAGCAAGAGTTTGGTGAGATGGAACGCAAGATTCTTGAAG-TGAAAAA-CAAGGTTCTG 1609
Query 1685 CT-CTaaaaaaacaaaaagaagca--gcaaaagaacagaaagatgcagcctacaaaaaga 1741
|| | || ||| ||| || | |||| | ||||| |||||| |||| ||||||
Sbjct 1610 GAGCTGCAGAAGCAAGAAGCGGCTCTGGAAAA-A-CAGAAGGATGCAACCTATGAAAAGA 1667
Query 1742 TATGTCAGATGGAGTCATGCGCAAAAGATCTTGATGTAGAGCTTGAAGGTGTGGAGTTTG 1801
||||| | ||||||||| | |||| |||||||| |||||||||||||| |||||||| |
Sbjct 1668 TATGTAAAATGGAGTCACGTGCAAGAGATCTTGGTGTAGAGCTTGAAGATGTGGAGT--G 1725
Query 1802 AGTTTGAGACAATTTTGTCGGCTCCCTGGTGA 1833
|||| ||||||||| |||| ||||||||||||
Sbjct 1726 AGTTGGAGACAATTCTGTCAGCTCCCTGGTGA 1757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90712384815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5