BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910917
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28230.1 | Symbols: | pseudogene, similar to glucose-6-phos... 579 3e-164
AT5G54800.1 | Symbols: GPT1, ATGPT1 | glucose 6-phosphate/phosp... 551 6e-156
AT4G03950.1 | Symbols: | Nucleotide/sugar transporter family p... 455 5e-127
AT1G11595.1 | Symbols: | pseudogene, putative glucose 6 phosph... 311 1e-83
> AT5G28230.1 | Symbols: | pseudogene, similar to glucose-6-phosphate/phosphate-translocator
precursor, contains similarity
to glucose-6-phosphate/phosphate-translocator precursors;
blastp match of 78% identity and 1.6e-75 P-value to GP|2997591|gb|AAC08525.1||AF020814
glucose-6-phosphate/phosphate-translocator
precursor {Pisum sativum} | chr5:10195174-10196616
REVERSE LENGTH=1443
Length=1443
Score = 579 bits (313), Expect = 3e-164
Identities = 444/506 (88%), Gaps = 13/506 (3%)
Strand=Plus/Plus
Query 1 ATGATTTCTTCAATTAAACCGGTTTCATCTTCCTTAACCGCAATCGCCGGCGTGAGACGA 60
|||||||||||||||||||||||||| |||||||| | ||||||| | ||| | ||||||
Sbjct 145 ATGATTTCTTCAATTAAACCGGTTTCGTCTTCCTTTAGCGCAATCACGGGCATAAGACGA 204
Query 61 TCAATTCCGGCAAAGCTTCGATTTTCTCCCTTACCCATTATCGGAAACTTCCAAAAGCCT 120
||||||| | ||||||||| |||||| ||||| ||||||||| ||||||||||||||||
Sbjct 205 TCAATTCTGCCAAAGCTTCAATTTTCACCCTTTTCCATTATCGAAAACTTCCAAAAGCCT 264
Query 121 AATCCTTTACCTCAGAAA-CCTCTTTTATCAGCTCAGAATTTGTCGAATTTCAC-TTT-- 176
|||| ||||||||| ||| |||||||||||| || ||||||||||||||||||| |||
Sbjct 265 AATCATTTACCTCA-AAAGCCTCTTTTATCATCTTAGAATTTGTCGAATTTCACTTTTGC 323
Query 177 GGCGGC-G--GCGCAGAGGAGTGATGTTTTTAGGGTTGGAGCTTACGAGGCTGACCGGTC 233
|||||| | ||| ||||||||||| || |||| || |||||||| ||| |||| || |
Sbjct 324 GGCGGCAGCAGCGTAGAGGAGTGAT-TTCTTAGAGTAGGAGCTTATGAGTCTGATTGGCC 382
Query 234 TCGTCCGATTGAAATCGGTATCGACGTTCCTGACGAACAATCGGGACAGAAGGTGAATAT 293
||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || |
Sbjct 383 TCGTCTGATTGAAATCGGTATCAACGTTCCTGACGAACAATCGGGACAGAAGGTTAAGCT 442
Query 294 TGGGATCTACTT-CGCGACTTGGTGGGCATTGAACGTTGTGTTCAATATCTACAACAAGA 352
|||||||| || ||| ||||||||||||||| || |||||||||||||||| || ||||
Sbjct 443 TGGGATCTG-TTGCGCAACTTGGTGGGCATTGCACATTGTGTTCAATATCTAGAAAAAGA 501
Query 353 AGGTTTTGAATGCTTTCCCTTACCCGTGGT-TAACTTCGACGCTCTCTCTTGCTTGTGGC 411
|||||||||||||||| |||||| ||| | |||||||||||||||||||| ||| ||||
Sbjct 502 AGGTTTTGAATGCTTTTCCTTACATGTG-TCTAACTTCGACGCTCTCTCTTCCTTCTGGC 560
Query 412 TCTTTGATGATGCTTGTCTCTTGGGTCACTGGAGTTGCAGAAGCTCCTAAAACCGATCTC 471
|||||||||| |||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 561 TCTTTGATGACGCTTGTCTCTTGGGTCACTGGAGTTGTAGAAGCTCTTAAAACCAATCTT 620
Query 472 GATTTCTGGAAAACTCTGTTCCCGGT 497
||||||| |||||||||||||| |||
Sbjct 621 GATTTCTAGAAAACTCTGTTCCTGGT 646
Score = 287 bits (155), Expect = 2e-76
Identities = 202/225 (90%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 944 GGTGGGTAGTGGCACAGAGTGTGTTCTACCATTTGTATAATCAAGTCTCATACATGTCCC 1003
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GGTGGGTAATGGCACAAAGTGTGTTCTACCATTTGTATAATCAAGTCTCATACATGTCCC 1259
Query 1004 TCAACCAGATTTCGCCACTCACATTTAGCGTTGGAAACACAATGAAGCGGATCTCAGTCA 1063
|| |||||||||| ||||| ||||||||||||||||||| ||||||| ||||||| ||||
Sbjct 1260 TCGACCAGATTTCACCACTAACATTTAGCGTTGGAAACAAAATGAAGTGGATCTCGGTCA 1319
Query 1064 TCGTCGCCTCAATCATCATCTTCCAAAACCCA-GTTAAACCTGTCAATGCCCTTGGTGCT 1122
|||| |||||||||||||||| ||||| | | |||||||||||||||||||| ||| |
Sbjct 1320 TCGTTTCCTCAATCATCATCTTTCAAAAAC-ATGTTAAACCTGTCAATGCCCTAAGTGTT 1378
Query 1123 GCCATTGCGATTCTTGGAACTTTCATCTATTCTCAGGTAAAAAAT 1167
|||||||| |||||||| ||||| | || |||| |||||||||||
Sbjct 1379 GCCATTGCAATTCTTGGGACTTTAACCTTTTCTTAGGTAAAAAAT 1423
> AT5G54800.1 | Symbols: GPT1, ATGPT1 | glucose 6-phosphate/phosphate
translocator 1 | chr5:22261271-22263921 FORWARD LENGTH=1663
Length=1663
Score = 551 bits (298), Expect = 6e-156
Identities = 709/902 (79%), Gaps = 50/902 (6%)
Strand=Plus/Plus
Query 287 TGAATATTGGGATCTACTTCGCGACTTGGTGGGCATTGAACGTTGTGTTCAATATCTACA 346
|||| || ||||| ||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 421 TGAAGATCGGGATTTACTTTGCTACTTGGTGGGCTTTGAACGTTGTGTTCAATATCTACA 480
Query 347 ACAAGAAGGTTTTGAATGCTT-TCCCTTACCCGTGG-TTAACTTCGACGCTCTCTCTTGC 404
|||||||||| ||||| |||| ||| |||||| ||| ||| || ||||||| ||||||||
Sbjct 481 ACAAGAAGGTCTTGAACGCTTATCC-TTACCCATGGCTTACCT-CGACGCTTTCTCTTGC 538
Query 405 TTG-TGGCTCTTTGATGATGCTTGTCTCTTGGGTCACT-GG-A--GTTGCAGAAGCTCCT 459
| ||| || |||||||||||| ||||||||| | | || | |||| ||| ||||
Sbjct 539 C-GCTGGTTCGTTGATGATGCTTATCTCTTGGG-CTGTTGGGATCGTTG-AGA--CTCCC 593
Query 460 AAAACCGATCTCGATTTCTGGAAAACTCTGTTCCCGGTGGCTTTGGCACATACGATTGGA 519
|| || ||| | ||||||||||||||||| || ||||| ||| ||||||| || |||||
Sbjct 594 AAGACGGATTTTGATTTCTGGAAAACTCTTTTTCCGGTTGCTGTGGCACACACAATTGGT 653
Query 520 CATGTAGCGGCAACAGTGAGTATGTCTAAAG-TCGCAGTGTCCTTCACACACATCATCAA 578
||||| || ||||| ||||||||||| |||| | || || || ||||| |||||||||||
Sbjct 654 CATGTGGCTGCAACGGTGAGTATGTC-AAAGGTTGCTGTTTCTTTCACTCACATCATCAA 712
Query 579 AAGTGGTGAACCAGCCTTTAGCGTCCTTGTCTCAAGCCTC-TTCTTAGGCGAGGCATTCC 637
||||||||||| || ||||| || |||||||| || | || || || || | ||||
Sbjct 713 GAGTGGTGAACCTGCGTTTAGTGTGCTTGTCTCGAGGTTTATT-TTGGGTGAAACCTTCC 771
Query 638 CTTTACCT-G-TTTACCTCTCCCTC-TTACCCATTATTGGAGGATGTGCTCT-TGCTGCA 693
|| || | | ||||| | || ||| || || || ||||| || || ||||| | ||||
Sbjct 772 CT--ACTTCGGTTTACTTGTCTCTCATT-CCAATCATTGGTGGTTGCGCTCTGT-CTGCC 827
Query 694 GTCACCGAGCTCAACTTCAATATGATCGGGTTT-ATGGGAGCTATGATATCGAATTTGGC 752
| |||||||| |||||||| ||||| || ||| |||||||||||||| ||||| |||||
Sbjct 828 CTTACCGAGCTTAACTTCAACATGATTGG-TTTCATGGGAGCTATGATTTCGAACTTGGC 886
Query 753 ATTT-GTGTTTCGTAACATATTCTCAAAGAAGGGGATGAAGGGGAAGTCAGTGAGTGGGA 811
||| ||||| |||||||| ||||| |||||||| |||||||| ||||| ||||| ||||
Sbjct 887 -TTTCGTGTTCCGTAACATCTTCTCGAAGAAGGGAATGAAGGGAAAGTCTGTGAGCGGGA 945
Query 812 TGAATTACTATGCTTG-CTTATCTATGATGTCTCT-TCTCATTGTCACTCC-TTTCGCCA 868
|||| ||||| || || || || ||| |||| || | | || ||||||| ||| ||||
Sbjct 946 TGAACTACTACGCCTGTCTC-TCAATGCTGTCCCTAT-TGATCCTCACTCCCTTT-GCCA 1002
Query 869 TTGCCGTGGAAGGTCCCCAAATGTGGG-CTGCTGGTTGGCAAA-ACGCCGTCTCCCAAAT 926
|||| || ||||| || || ||||||| | | ||| ||||| | | || | ||| | | |
Sbjct 1003 TTGCTGTTGAAGGACCTCAGATGTGGGTC-GATGGCTGGCAGACA-GC-G-CTCGCTACT 1058
Query 927 --CGGACCAAACTTCGTCTGGTGGGTAGTGGCACAGAGTGTGTTCTACCATTTGTATAAT 984
||||||| | || ||||||||||| || || |||||||||||||| || | || ||
Sbjct 1059 GTCGGACCACAGTTTGTCTGGTGGGTGGTTGCGCAGAGTGTGTTCTATCACCTCTACAAC 1118
Query 985 CAAGTCTCATACATGTCCCTCA-ACCAGATTTCGCCACTC-ACATTTAGCGTTGGAAACA 1042
||||| || |||||||| | | |||| || || || || || ||||| ||||| ||||
Sbjct 1119 CAAGTGTCTTACATGTCTTT-AGACCAAATCTCTCC-CTTGACGTTTAGTGTTGGTAACA 1176
Query 1043 CAATGAAGCGGATCTCAGTCATCGTCGCCTCAATCATCATCTTCCAAAAC-CCAGTTAAA 1101
| ||||| || ||||| ||||| ||| |||| ||||| ||||||| | | ||||| |
Sbjct 1177 CCATGAAACGTATCTCCGTCATTGTCTCCTCCATCATTATCTTCCGCA-CTCCAGTCCAG 1235
Query 1102 CCTGTCAATGCCCTTGGTGCTGCCATTGCGATTCTTGGAACTTTCATCTATTCTCAGGTA 1161
|| |||||||| ||||| || |||||||| || |||||||| ||| | ||||| |||| |
Sbjct 1236 CCCGTCAATGCTCTTGGAGCAGCCATTGCTATCCTTGGAACCTTCTTGTATTCCCAGGCA 1295
Query 1162 AA 1163
||
Sbjct 1296 AA 1297
> AT4G03950.1 | Symbols: | Nucleotide/sugar transporter family
protein | chr4:1879518-1881111 FORWARD LENGTH=834
Length=834
Score = 455 bits (246), Expect = 5e-127
Identities = 304/331 (92%), Gaps = 8/331 (2%)
Strand=Plus/Plus
Query 677 GATGTGCTCTTGCTGCAGTCACCGAGCTCAACTTCAATATGATCGGGTTTATGGGAGCTA 736
|||||||||||||||| || | |||||||||||||||||||| ||||||||||| || |
Sbjct 332 GATGTGCTCTTGCTGCTGTTATGGAGCTCAACTTCAATATGATAGGGTTTATGGGGGCAA 391
Query 737 TGATATCGAATTTGGCATTTGTGTTTCGTAACATATTCTCAAAGAAGGGGATGAAGGGGA 796
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 392 TGATATCGAATTTGGCGTTTGTGTTTCGTAACATATTCTCAAAGAAGGGAATGAAGGGGA 451
Query 797 AGTCAGTGAGTGGGATGAATTACTATGCTTGCTTATCTATGATGTCTCTTCTCATTGTCA 856
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 452 AGTCAGTGAGTGTGATGAATTACTATGCTTGCTTATCTATGATGTCTCTTCTCATTGTTA 511
Query 857 CTCCTTTCGCCA-TTGCCGTGGAAGGTCCCCAAATGTGGGCTGCTGGTTGGCAAAACGCC 915
|||||||||||| || | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 512 CTCCTTTCGCCAATT-CTGTGGAAGGTCCCCAAATGTGGGCTGATGGTTGGCAAAACGAT 570
Query 916 GTCTCCCAAATCGGACCAAACTTCGTCT-G---GTGGGTAGTGGCACAGAGTGTGTTCTA 971
||||| |||||||||||||||| |||| | ||||||||||||||| ||||| |||||
Sbjct 571 GTCTCT-AAATCGGACCAAACTTTGTCTAGTAAGTGGGTAGTGGCACATAGTGTTTTCTA 629
Query 972 CCATTTGTATAATCAAGTCTCATACATGTCC 1002
||||||||||||||||||||||||||| |||
Sbjct 630 CCATTTGTATAATCAAGTCTCATACAT-TCC 659
Score = 209 bits (113), Expect = 4e-53
Identities = 135/146 (92%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 292 ATTGGGATCTACTTCGCGACTTGGTGGGCATTGAACGTTGTGTTCAATATCTACAACAAG 351
||||||||||| ||||| | ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 52 ATTGGGATCTATTTCGCAATTTGGTGGGCATTGAACGGTGTGTTCAATAACTACAACAAG 111
Query 352 AAGGTTTTGAATGCTTTCCCTTACCCGTGGTTAACTTCGACGCTCTCTCTTGCTTGTGGC 411
||||||||||||||||| |||||| |||| |||||| |||||| |||||||||||||||
Sbjct 112 AAGGTTTTGAATGCTTTTCCTTACTTGTGGCTAACTTTGACGCTTTCTCTTGCTTGTGGC 171
Query 412 TCTTTGATGATGCTTGTCTCTTGGGT 437
||||||||||||||||||||||||||
Sbjct 172 TCTTTGATGATGCTTGTCTCTTGGGT 197
Score = 165 bits (89), Expect = 9e-40
Identities = 122/138 (88%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 495 GGTGGCTTTGGCACATACGATTGGACATGTAGCGGCAACAGTGAGTATGTCTAAAGTCGC 554
|||||||||||| ||||| ||||||||||| | || | |||||||||||||||||| |
Sbjct 195 GGTGGCTTTGGCGCATACAATTGGACATGTTGAAGCGATAGTGAGTATGTCTAAAGTAGT 254
Query 555 AGTGTCCTT--CACACACATCATCAAAAGTGGTGAACCAGCCTTTAGCGTCCTTGTCTCA 612
||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 255 AGTGTCCTTCACACACACATCATCAAAAGCAGTGAGGCAGCCTTTAGCGTCCTTGTCTCA 314
Query 613 AGCCTCTTCTTAGGCGAG 630
||||||||||| ||||||
Sbjct 315 AGCCTCTTCTTGGGCGAG 332
> AT1G11595.1 | Symbols: | pseudogene, putative glucose 6 phosphate/phosphate
translocator, blastp match of 60% identity and
2.3e-78 P-value to GP|2997593|gb|AAC08526.1||AF020816 glucose-6-phosphate/phosphate-translocator
precursor {Solanum tuberosum}
| chr1:3898631-3899699 FORWARD LENGTH=1069
Length=1069
Score = 311 bits (168), Expect = 1e-83
Identities = 206/224 (92%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 721 GGGTTTATGGGAGCTATGATATCGAATTTGGCATTTGTGTTTCGTAACATATTCTCAAAG 780
||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 597 GGGTTTATGGGGGCGATGATATCAAATTTGGCGTTTGTGTTTCGTAACATATTCTCAAAG 656
Query 781 AAGGGGATGAAGGGGAAGTCAGTGAGTGGGATGAATTACTATGCTTGCTTATCTATGATG 840
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 AAGGGAATGAAGGGGAAGTCAGTGAGTGTGATGAATTACTATGCTTGCTTATCTATGATG 716
Query 841 TCTCTTCTCATTGTCACTCCTTTCGCCA-TTGCCGTGGAAGGTCCCCAAATGTGGGCTGC 899
||||||||||||| ||||||||||||| || |||||||||||||||||||||| ||
Sbjct 717 ACTCTTCTCATTGTTACTCCTTTCGCCAATTAT-GTGGAAGGTCCCCAAATGTGGGTTGA 775
Query 900 TGGTTGGCAAAACGCCGTCTCCCAAATCGGACCAAACTTCGTCT 943
|||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 776 TGGTTGGCAAAACGATGTCTCC-AAATCGGACCAAACTTTGTCT 818
Score = 279 bits (151), Expect = 3e-74
Identities = 207/234 (88%), Gaps = 3/234 (1%)
Strand=Plus/Plus
Query 488 TGTTCCCGGTGGCTTTGGCACATACGATTGGACATGTAGCGGCAACAGTGAGTATGTCTA 547
|||| | |||||||||||| ||||| ||||||||||| | || | ||||||||||||||
Sbjct 266 TGTT-CAGGTGGCTTTGGCGCATACAATTGGACATGTTGAAGCGATAGTGAGTATGTCTA 324
Query 548 AAGTCGCAGTGTCCTT--CACACACATCATCAAAAGTGGTGAACCAGCCTTTAGCGTCCT 605
|||| | ||||||||| |||||||||||||||||| |||| |||||||| |||||||
Sbjct 325 AAGTAGTAGTGTCCTTCACACACACATCATCAAAAGCAGTGAGGCAGCCTTTGGCGTCCT 384
Query 606 TGTCTCAAGCCTCTTCTTAGGCGAGGCATTCCCTTTACCTGTTTACCTCTCCCTCTTACC 665
|||||||||||||||||| |||||| |||||||| ||| |||||||||||||||||||||
Sbjct 385 TGTCTCAAGCCTCTTCTTGGGCGAGTCATTCCCTCTACATGTTTACCTCTCCCTCTTACC 444
Query 666 CATTATTGGAGGATGTGCTCTTGCTGCAGTCACCGAGCTCAACTTCAATATGAT 719
||||||| ||||||||||||||||||| || || ||||||||||||| ||||||
Sbjct 445 CATTATTTGAGGATGTGCTCTTGCTGCTGTTACGGAGCTCAACTTCAGTATGAT 498
Score = 206 bits (111), Expect = 5e-52
Identities = 135/147 (92%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 944 GGTGGGTAGTGGCACAGAGTGTGTTCTACCATTTGTATAATCAAGTCTCATACATGTCCC 1003
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 921 GGTGGGTAGTGGCACATAGTGTTTTCTACCATTTGTATAATCAAGTCTCATACATGTCTC 980
Query 1004 TCAACCAGATTTCGCCACTCACATTTAGCGTTGGAAACACAATGAAGCGGATCTCAGTCA 1063
|| || ||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 981 TCGACTAGATTTCACCACTGACATTTAGCGCTGGAAACACAATGAAGCGGATCTCATTCC 1040
Query 1064 TCGTCGCCTCAATCATCATCTTCCAAA 1090
|||| ||||| ||||||||||||||||
Sbjct 1041 TCGTTGCCTCTATCATCATCTTCCAAA 1067
Score = 172 bits (93), Expect = 5e-42
Identities = 111/120 (93%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 378 GTGGTTAACTTCGACGCTCTCTCTTGCTTGTGGCTCTTTGATGATGCTTGTCTCTTGGGT 437
|||| |||||| |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 12 GTGGCTAACTTTGACGCTTTCTCTTGCTTATGGCTCTTTGATGATGCTTGTCTCTTGGGT 71
Query 438 CACTGGAGTTGCAGAAGCTCCTAAAACCGATCTCGATTTCTGGAAAACTCTGTTCCCGGT 497
|||| ||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||
Sbjct 72 CACTCGAGTTGCAGAAGCTCTTAAAATCGATCTCGATTTCTGGAAATCTTTGTTCCCGGT 131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5