BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910932
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11730.1 | Symbols: | Galactosyltransferase family protein ... 1692 0.0
> AT1G11730.1 | Symbols: | Galactosyltransferase family protein
| chr1:3957473-3960113 FORWARD LENGTH=1155
Length=1155
Score = 1692 bits (916), Expect = 0.0
Identities = 1108/1194 (93%), Gaps = 39/1194 (3%)
Strand=Plus/Plus
Query 1 ATGTCTTTCAAGAACAGAGGAGAGTACAATTTTACTCCAAGAAATGTAGTTTCTAGAAAC 60
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCATTCAAGAACAGAGGAGATTACAATTTTACTCCAAGAAATGTAGTTTCTAGAAAC 60
Query 61 TCTGTATTTTTCATGTGCCTCGCAAGTTTCTGCCTTGGAATGTTCTTCACTAACAGGATG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGTATTTTTCATGTGCCTCGCAAGTTTCTGCCTTGGAATGTTCTTCACTAACAGGATG 120
Query 121 TGGAATGTAGTACCTGAAGCTAGAGGCATATCAAGACTCTCCAAACTAAGCTTAAGTTCT 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAATATAGTACCTGAAGCTAGAGGCATATCAAGACTCTCCAAACTAAGCTTAAGTTCC 180
Query 181 AGTGATTGCCATAAAAAGAATGTTTTGGAGTTTGGTAACAACACTATCGGGATCTTAGAT 240
||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 181 AGTGATTGCGATAAAAAGAATGTTTTGGACTATGGTAACAACACTATCGGGATCTTAGAT 240
Query 241 AAATCCATTTCAAGTTTAGAGATCAAACTAGTAGCTGCTAGAGCCGAACGCGAGTCGTTG 300
||||||||||||| ||||||||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 241 AAATCCATTTCAAATTTAGAGATGAAACTAGTAGCTGCTAGAGCTGAACGTGAGTCATTG 300
Query 301 GCCGGGAAATTTAACATTTCCAAAGAAGCGAAGAAAAGAAAATACTTCATGGTTATCGGT 360
|||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 301 TCCGGGAAATTTAACATATCCAATGAAGCTAAGAAAAGAAAATACTTCATGGTTATCGGT 360
Query 361 ATTAACACGGCCTTTAGTAGTCGTAAGAGACGTGACTCTGTCCGGTCAACATGGATGCCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTAACACGGCCTTTAGTAGTCGTAAGAGACGTGACTCTGTCCGGTCAACATGGATGCCA 420
Query 421 CAAGGAGAGAAGCTTAAGAAACTTGAAGAAGAGAAAGGCATCATTGTTCGCTTTGTTATT 480
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 CAAGGAGAGAATCTTAAGAAACTTGAAGAAGAGAAAGGCATCATTGTTCGCTTTGTTA-T 479
Query 481 GGACACAGGTACAATGGAGAAGTCATTGTGTTGTCTCGGGGGATTCTTGATAAAGCCATT 540
||| || || || ||||||||| | ||||||||||||||||| |||
Sbjct 480 ------AGG-AC-AT-----AG----TGTGTTGTCCCACGGGATTCTTGATAAAGCTATT 522
Query 541 GAAGCAGAAGAGAAAACACATGGTGATTTCTTGAGACTGGAACATACGGAGGGATACATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GAAGCAGAAGAGAAAACACATGGTGATTTCTTGAGACTGGAACATACGGAGGGATACATG 582
Query 601 GAGTTATCTGCCAAGACAAAGACGTTTTTCGCTACCTCTGTTTCCTTGTGGGACGCAGAA 660
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 583 AAGTTATCTGCCAAGACAAAGACGTTTTTCGCTACCGCTGTTTCCTTGTGGGATGCAGAA 642
Query 661 TTCTACATCAAAGTTGACGACGACGTTCATGTGAATCTTGCCACTCTCAAGAAGACTTTA 720
|||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |||||
Sbjct 643 TTCTACATCAAAGTTGACGATGACGTTCATGTGAATCTTGCCTCCCTCAAGAAGGCTTTA 702
Query 721 TCCGTACACCGAAACAAGCCTCGAGTTTACGTTGGTTGCATGAAGTCCGGTCCCGTCCTA 780
|||| ||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 703 TCCGCACACCAAAACAAGCCTCGGGTTTATGTTGGTTGCATGAAGTCTGGTCCCGTCCTA 762
Query 781 GCCAGAAATAGTGTGAAGTACCATGAACCAGAGTATTGGAAGTTTGGAGAGGTCGGGAAC 840
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 763 GCCAGAAAGAGTGTGAAGTACCATGAGCCAGAGTATTGGAAGTTTGGAGAAGTCGGGAAC 822
Query 841 AAGTATTTCCGCCACGCCACGGGACAGTTTTACGCCATATCTAAAGATCTAGCTACTTAC 900
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 823 AAGTATTTCCGCCACGCCACTGGACAGTTTTATGCTATATCTAAAGATCTAGCTACTTAC 882
Query 901 ATACTGATAAACCAGGATTTACTGCATAAGTATGCGAATGAAGATGTTTCGTTGGGATCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 ATACTGATAAACCAGGATTTACTGCATAAGTATGCGAATGAAGATGTTTCGTTGGGATCT 942
Query 961 TGGTTCATCGGATTGAATGTAGAACATGTTGATGACAAAAGACTCTGTTGCAGTACTTCT 1020
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 943 TGGTTCATCGGATTGAATGTAGAACATGTTGATGAAAAAAGACTTTGTTGCAGTACTTCT 1002
Query 1021 CAGGGTAAAGAGCTTAACAATCCTGATTGTGAACTAAAAGCAGTGATGGGACATAATTGT 1080
|| | || || | | | ||||||||||| ||||||||||| |||
Sbjct 1003 CA----A--GA--TT---------G-T-G--AACTAAAAGCAATGATGGGACATGTTTGC 1041
Query 1081 GCGGCGTCGTTCGACTGGAAATGCAGCGGAATCTGTCGATCGGCTGAGAGGATGGCCGAC 1140
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1042 GCGGCGTCGTTCGACTGGAAATGCAGCGGAATCTGTCGGTCGGCTGAGAGGATGGCCGAC 1101
Query 1141 GTTCACGAACGTTGTGGCGAACCTCAAAATGCATTATGGACGTCAAATTCCTGA 1194
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1102 GTTCACGAACGTTGTGGTGAACCTCAAAATGCATTATGGACGTCAAATTCCTGA 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5