BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910935
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11755.1 | Symbols: LEW1 | Undecaprenyl pyrophosphate synthe... 1219 0.0
AT1G11760.1 | Symbols: MED32 | MED32; Has 41 Blast hits to 40 p... 632 2e-180
> AT1G11755.1 | Symbols: LEW1 | Undecaprenyl pyrophosphate synthetase
family protein | chr1:3969681-3971840 REVERSE LENGTH=1331
Length=1331
Score = 1219 bits (660), Expect = 0.0
Identities = 728/762 (96%), Gaps = 0/762 (0%)
Strand=Plus/Plus
Query 423 ATATATGGATTCGAATCAATCGATGCGGCTCCTGAGTTCTTGGATTGGTCAAATTGGTGA 482
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 257 ATATATGGATTCGAATCAATCGATGCGGCTCCTCAGTGCTTGGATTGGTCAAATTGGTGA 316
Query 483 TCTTGGTCTTAATTTGCTATGGCGTTTCATACACATTGTTGTGAGCTTGTGGTACATTGT 542
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 317 TCTTGGTCTTAATTTGCTATGGCGTTTTATACACATTGTTGTGAGCTTATGGTACATTGT 376
Query 543 ATCTGGCATATTTGAGGCAATCGAAAGCTATGCCATATCGTTAGGATTGAATAAAAAGTA 602
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 377 CTCTGGCATATTTGAGGCAATAGAAAGCTATGCCATAACGTTAGGATTGAATAAAAAGTA 436
Query 603 CAGTTCCATCGATCTTGAGAAACTCCGGTGTCTAGCTGTTGTAGTGGACATCGAAGCAGT 662
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 CGGTTCCATCGATCTTGAGAAACTCCGGTGTCTAGCTGTTGTAGTGGACATCGAAGCAGC 496
Query 663 TCAAGATGTTGCCAAGGTTGTTGAGCTTTTGCAATGGCTAACAACCATTGGGGTGAAACA 722
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 497 TCAAGATGTTGCCAATGTTGTTGAGCTTTTGCAATGGCTAACCACCATTGGGGTTAAACA 556
Query 723 AGTTGGTCTTTTTGACTCGCAAGGTGTACTGAAGAAATCCAAGGATTTGATCCTTGAAAC 782
||||||||| |||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 557 AGTTGGTCTATTTGACTCTCAAGGTTTATTGAAGAAATCCAAGGATTTGATCCTTGAAAC 616
Query 783 CGTTCCAGGTTCGATGTTGTTAGAGGAGATTGGAAAGGATTTTTCGCCTGACGGAAAGCG 842
|||||||||||| ||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 617 CGTTCCAGGTTCCATGTTGTTAGAGGAGATTGAAAAGGATGTTGCGCCTGACGGAAAGCG 676
Query 843 CATTGCATTAGAATTTATTTCATCTTCCGACAATAAAGAAGCTGTTATGAAAGCAGCCAA 902
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 677 CATTGCATTAGAATTCATTTCATCTTCAGACAATAAAGAAGCTGTTATGAAAGCAGCCAA 736
Query 903 CATACTTCTTCAGAGATACTTGAAATCCAGCCATCCCGAGAACGATAAAGGGGAAAACTT 962
|||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||
Sbjct 737 CATACTTCTTCAGAGATACTTGAAATCCAGCCATCCTGAGGACGACAAAGGGGAAGACTT 796
Query 963 TTTTACAGAGTCTCATTTGAATGAAGCATTAGGAGTTGTTGGTGAGAATGTACACGTGCC 1022
|||||||||||||||||||||||| |||||| ||||||||||||||||||| || || ||
Sbjct 797 TTTTACAGAGTCTCATTTGAATGACGCATTAAGAGTTGTTGGTGAGAATGTGCATGTACC 856
Query 1023 CGATCTGTTACTGGTTTATGGACCTATAAGGAGCCACCTCGGTTTCCCTGCTTGGAGACT 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CGATCTGTTACTGGTTTATGGACCTATAAGGAGCCACCTCGGTTTCCCTGCTTGGAGACT 916
Query 1083 TCGATACACTGAGATAGTACATATGGGAACTTTGAAGTATATGAGATATGGTTCCCTGTT 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 917 TCGATACACTGAGATAGTACATATGGGAACTTTGAAGTATATGAGATATGGTTCCCTTTT 976
Query 1143 GAAGGCAATTCACAAGTTCACAGGTGTACACCAAAACTATGG 1184
|||||||||||||||||||||||| || ||||||||||||||
Sbjct 977 GAAGGCAATTCACAAGTTCACAGGAGTCCACCAAAACTATGG 1018
> AT1G11760.1 | Symbols: MED32 | MED32; Has 41 Blast hits to 40
proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:3972032-3973286 REVERSE LENGTH=847
Length=847
Score = 632 bits (342), Expect = 2e-180
Identities = 401/427 (94%), Gaps = 13/427 (3%)
Strand=Plus/Plus
Query 1 ATGGATAACATTGTGGACTCATTGAACAAAGCTTACGAGAAGTTTGTTCTTGCTTCAGCT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 68 ATGGATAACATTGTGGACTCATTGAACAAAGCTTATGAGAAGTTTGTTCTTGCTTCAGCT 127
Query 61 GGTGTTCTTGAGTCTAAAGAGAGTGCAGGTGGGCAAAAAGCATCT-CTCACTGATGCTGC 119
|||||||||||||||||||||||||||||||| |||||||| | | ||||||||| ||||
Sbjct 128 GGTGTTCTTGAGTCTAAAGAGAGTGCAGGTGGACAAAAAGC-TTTGCTCACTGATACTGC 186
Query 120 GTTGGAGAATTTCAAGGAGAAATGGGAACTGTTCCGTGTGGCTTGTGATCAAGCAGAGGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GTTGGAGAATTTCAAGGAGAAATGGGAACTGTTCCGTGTGGCTTGTGATCAAGCAGAGGA 246
Query 180 GTTTGTGGAGTCAGTTAAGCAGAGAATTGGATCTGAGTGTTTAGTTGATGAGGCTACTGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GTTTGTGGAGTCAGTTAAGCAGAGAATTGGATCTGAGTGTTTAGTTGATGAGGCTACTGG 306
Query 240 TTTAACTACTGCAT-CAGGAAACTCAGGAGGTCAAGCACCAGCTGC--T-ACTGGTGCTG 295
|||||||||| | | ||| | ||| || ||||||||||| || | ||||||||||
Sbjct 307 TTTAACTACTAC-TGCAG----C--AGGTGGCCAAGCACCAGCAGCGGTGACTGGTGCTG 359
Query 296 CGACTAGTCTTCCACCCATTAGTGCAGTAAGGCTTGAACAGATGAGTAGAGCGGTTCGAT 355
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGACTAGTCTCCCTCCCATTAGTGCAGTAAGGCTTGAACAGATGAGTAGAGCGGTTCGAT 419
Query 356 GGCTTGTTCTTGAGCTGCAACGTGGCTCCGGTGCAGCTCCTGGTTCTGTTCATTCCTCCT 415
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||
Sbjct 420 GGCTTGTTCTTGAGCTGCAACGTGGCTCTGGTGTAGCTCCTGGTTCTGTTCATTCATCCT 479
Query 416 CTACCGG 422
|||||||
Sbjct 480 CTACCGG 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5