BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910941
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11820.2 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2250 0.0
> AT1G11820.2 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr1:3991027-3993598 REVERSE LENGTH=1924
Length=1924
Score = 2250 bits (1218), Expect = 0.0
Identities = 1380/1456 (95%), Gaps = 19/1456 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTTCACTAGCATGGTTTCCACCGTTCCTGttctcttcttcttcttcactcttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 ATGGCTTTCACTAGCATGGTTTCCACCGTTCCTGTTCTCTTCTTCTTCTTCACTCTTCTT 331
Query 61 TTGGTTTTTGCGAATTCGTCGTCTTTATCTCACGATATTAAGGTCCAGGAACAAGACAAA 120
||| ||| ||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 332 TTGATTTCTGCGAATTCGTCGTCTTTATCTCACAACATTAAGGTTCAGGAACAAGACAAA 391
Query 121 GATCCATTTGTTGGTTTCAACATCGGCACAGATGTCTCTAATCTACTCTCGCCGACAGAA 180
||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 392 GATCCCTTCGTTGGTTTCAACATCGGCACAGATGTCTCTAATCTTCTCTCGCCGACGGAA 451
Query 181 TTAGTCAAATTTCTCCAAACTCAGAAAGTAAATCATGTCCGATTATACGATGCTGATCCA 240
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 452 TTAGTCAAATTTCTCCAAGCTCAGAAAGTAAATCACGTCCGATTATACGATGCTGATCCA 511
Query 241 GAATTACTCAAAGCATTGGCTAAAACCAAGATACGAGTCATAATCAGTGTACCAAACAAT 300
||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 512 GAATTGCTCAAAGCATTAGCTAAAACCAAGGTACGAGTCATAATCAGTGTACCAAACAAT 571
Query 301 CAGCTTCTCGCAATTGGATCTTCCAACAGTACCGCTGCGTCATGGATTGGTCGAAATGTT 360
||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 572 CAGCTTCTCGCTATTGGATCATCCAACAGTACTGCTGCGTCATGGATTGGTAGAAATGTT 631
Query 361 GTTGCTTATTACCCTGAAACATTAATCACAGCCATTTCTGTTGGAGATGAGGTTTTAACA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GTTGCTTATTACCCTGAAACATTAATCACAGCCATTTCTGTTGGAGATGAGGTTTTAACA 691
Query 421 ACTGTACCTTCTTCAGCTCCTTTGCTTTTACCTGCAATTGAGTCTTTATACAATGCTCTT 480
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 692 ACTGTGCCTTCTTCAGCTCCTTTGCTTTTACCTGCTATTGAGTCTTTATACAATGCTCTT 751
Query 481 GTTGCTTCCAATCTCCACACTCAAATCAAAGTCTCTACGCCTCACGCAGCTTCGATTATG 540
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 752 GTTGCTTCTAATCTCCACACTCAAATCAAGGTCTCTACGCCTCACGCAGCTTCCATCATG 811
Query 541 CTCGATACGTTCCCGCCTTCTCAAGCTTACTTTAACCAGACTTGGCATTCGATTATGGTT 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 CTCGATACTTTCCCGCCTTCTCAAGCTTACTTTAACCAGACTTGGCATTCGATTATGGTT 871
Query 601 CCGT-TGCTTCAGTTCTTGTCGAAAACGGGTTCTCCTTTGATGATGAATCTGTATCCTTA 659
|| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 872 CC-TCTGCTTCAGTTCTTGTCGAAAACAGGTTCTCCTTTGATGATGAATCTGTATCCTTA 930
Query 660 CTATGTTTATATGCAGAACAAAGGCGTGGTTCCGCTCGATAACTGTTTGTTCGAGCCTTT 719
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 931 CTATGTTTATATGCAGAACAAAGGTGTGGTTCCGCTCGATAACTGTTTGTTTGAGCCATT 990
Query 720 GACACCGTCTAAAGAAATGGTTGATCCCAATACTTTGTTGCATTACACTAATGTGCTTGA 779
||||||||||||||||||||| ||||| || ||||||||||||||||| ||||| |||||
Sbjct 991 GACACCGTCTAAAGAAATGGTGGATCCGAACACTTTGTTGCATTACACGAATGTTCTTGA 1050
Query 780 TGCTATGGTTGATGCTGCTTATGTCTCGATGAAAAACTTGAATGTGTCTGATGTGGTTGT 839
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1051 TGCTATGGTTGATGCTGCTTATGTCTCGATGAAAAACTTAAATGTGTCTGATGTGGCTGT 1110
Query 840 GCTTGTGACCGAGAGCGGCTGGCCTTCAAAAGGTGATTCGAAAGAGCCATATGCTACTAT 899
||||||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1111 GCTTGTGACTGAGAGTGGCTGGCCTTCGAAAGGTGACTCGAAAGAGCCTTATGCTACTAT 1170
Query 900 CGACAATGCTGATACGTATAACTCGAATTTGATCAAGCATGTGTTTGATAGAACTGGTAC 959
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 CGACAATGCTGATACGTACAACTCGAATTTGATCAAGCATGTGTTTGATAGAACTGGTAC 1230
Query 960 TCCTTTGCACCCTGAGATGACTTCAAGTGTCTACATTTATGAGCTGTTTAACGAGGATTT 1019
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1231 TCCTTTGCACCCTGAGATGACTTCAAGTGTCTACATTTATGAGTTGTTTAATGAGGATTT 1290
Query 1020 GAGGGCTCCTCCAGTTAGTGAAGCTAGCTGGGGGTTATTCTCCGGGAACTCTACACCGGT 1079
|||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1291 GAGGGCTCCTCCGGTTAGTGAAGCTAGTTGGGGGTTATTCTATGGGAACTCTACACCGGT 1350
Query 1080 TTATTTGCTTCATGTATCTGGAAGCGGAACATTCTTAGCGAACGATACAACAAACCAGAC 1139
|||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 1351 TTATTTGCTTCATGTATCTGGAAGTGGAACGTTCTTAGCGAATGATACAACAAACCAGAC 1410
Query 1140 GTACTGCATTGCTATGGATGGTGTGGATGCGAAGACGCTTCAGGCTGCATTGGATTGGGC 1199
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1411 TTACTGCATTGCTATGGATGGTGTGGATGCGAAGACGCTTCAAGCTGCATTGGATTGGGC 1470
Query 1200 TTGTGGACCTGGGAGATCTAATTGTAGTGAGATTCAACCTGGGGAGAGTTGTTATCAGCC 1259
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1471 TTGTGGACCTGGGAGATCTAACTGTAGTGAGATTCAACCTGGGGAGAGTTGTTACCAGCC 1530
Query 1260 GAATAATGTGAAGGGACATGCTTCGTTTGCTTTTAATAGTTATTACCAGAATGAAGGAAG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1531 GAATAATGTGAAGGGACATGCTTCGTTTGCTTTTAATAGTTATTACCAGAAGGAAGGAAG 1590
Query 1320 AGCTTCTGGTTCATGTGACTTCAAAGGTGTGGCAATGATCACTACTACTGACCCAGAGAT 1379
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 1591 AGCTTCTGGTTCATGTGACTTCAAAGGTGTGGCTATGATCACTACTACTGACCCA-AG-T 1648
Query 1380 GCTTATGTTTCAGGTCATGGAAGCTGCATTTTCCCGGGAAGCAAGAAGGTCGGAAATAGG 1439
| ||| | | | ||||||||||||||||||||||||||||||||||||||
Sbjct 1649 -C--ATG-----G---A---A-GCTGCATTTTCCCGGGAAGCAAGAAGGTCGGAAATAGG 1693
Query 1440 ACACAGACAGTGGTGA 1455
||||||||||||||||
Sbjct 1694 ACACAGACAGTGGTGA 1709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5