BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910955

Length=1170
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09650.1 | Symbols:  | F-box and associated interaction doma...   224    1e-57


> AT1G09650.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:3125807-3127284 FORWARD LENGTH=1478
Length=1478

 Score =  224 bits (121),  Expect = 1e-57
 Identities = 304/389 (78%), Gaps = 25/389 (6%)
 Strand=Plus/Plus

Query  522   GCTTGGATTCGGTAGAGACAAAGTAAGGGGCACATACAAGCCCGTTTGGTTGTATAATTC  581
             |||||||||||||| ||||||| | |  ||||||||||||||||||||||| || || ||
Sbjct  669   GCTTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTGGTTATACAACTC  728

Query  582   ATCT-G-AATATGGCCTAGAAAACATTACCACTTGTGAAGTTTTCGACTTTAGCACCAAC  639
              | | | ||| |||||||||||||  ||| || || || |||||||||||||||||||||
Sbjct  729   -TATAGAAAT-TGGCCTAGAAAACGCTACTACATGCGAGGTTTTCGACTTTAGCACCAAC  786

Query  640   GCTTGGAGGT-TCCTTCTCCAAGCTTCTCTTTATCGGATTCGT-GGT-GATCATTACCCA  696
             |||||||||| |  ||| ||| ||| ||| |||| ||||| || ||| |  |   |||  
Sbjct  787   GCTTGGAGGTATGTTTCACCA-GCTGCTCCTTATAGGATT-GTTGGTTGCCCCGCACCT-  843

Query  697   GTGTATTTAGAGGGGTCACTTTACTGGTTCACTGAGTGTGAAGAAACCAAGGTT-TTATC  755
             || |   |||| ||||| ||| | |||||||| ||||| || ||||||||  || || ||
Sbjct  844   GTCTGCGTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAAACCAAAATTCTT-TC  902

Query  756   TTTCGATCTTCACACCGAAACTTTTCAAGTCATCTCAAAAACTCCCTTTCCCCATGT-GC  814
              |||||||||||||||||||| ||||||||  |||| ||| |||||||| || |||| | 
Sbjct  903   GTTCGATCTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCCAATGTAGA  962

Query  815   GTG-ACCCTCTCGGCT-TCAA-CATGTGCATCCTCGATAACCGCTTGTGCGTATCTGAGA  871
              || |   | |||  | | |  |||||||| |||||| |||||||||||||| || ||||
Sbjct  963   -TGGA---T-TCGA-TAT-AGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAGA  1015

Query  872   CAAAT-TGGCCCACCCAAGTCATATGGTC  899
               ||  || |||| |||||| ||||||||
Sbjct  1016  TGAAGCTG-CCCAACCAAGTGATATGGTC  1043



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57429423480


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5