BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910961
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12010.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1502 0.0
AT1G62380.1 | Symbols: ACO2, ATACO2 | ACC oxidase 2 | chr1:2308... 893 0.0
> AT1G12010.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:4056207-4057933
FORWARD LENGTH=1293
Length=1293
Score = 1502 bits (813), Expect = 0.0
Identities = 914/964 (95%), Gaps = 2/964 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGACCATTAAGTTTCCAGTTATCGACTTGTCTAAGCTCAATGGTAAAGAGAGA 60
||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 68 ATGGAGATGAACATTAAGTTTCCAGTTATAGACTTGTCTAAGCTCAATGGTGAAGAGAGA 127
Query 61 GACCAAACCATGGCTTTGATCGAAGATGCTTGTCAAAACTGGGGCTTCTTTGAGCTGGTG 120
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 128 GACCAAACCATGGCTTTGATCGACGATGCTTGTCAAAACTGGGGCTTCTTCGAGCTGGTG 187
Query 121 AACCATGGACTACCATACGATCTAATGGACAACATTGAGAGGATGACAAAGGAACACTAC 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 AACCATGGACTACCATATGATCTAATGGACAACATTGAGAGGATGACAAAGGAACACTAC 247
Query 181 AAGAAACATATGGAACAAAAGTTCAAAGAAATGCTCCGTTCCAAAGGTTTAGATACTCTT 240
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 248 AAGAAACATATGGAACAAAAGTTCAAAGAAATGCTTCGTTCCAAAGGTTTAGATACCCTC 307
Query 241 GAGACCGAAGTCGAAGATGTTGATTGGGAAAGCACTTTCTACCTCCGCCATCTCCCTCAA 300
||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 308 GAGACCGAAGTTGAAGATGTCGATTGGGAAAGCACTTTCTACCTCCATCATCTCCCTCAA 367
Query 301 TCTAACCTCTACGACATCCCTGATATGTCGAACGAATACCGATTGGCAATGAAGGATTTT 360
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 368 TCTAACCTATACGACATCCCTGATATGTCAAATGAATACCGATTGGCAATGAAGGATTTT 427
Query 361 GGAAAGATGG-TGGAGAATCTAGCAGAAGAGCTATTGGATTTGTTGTGTGAGAACCTAGG 419
|| |||| || | |||| |||||| |||||||||||||| |||||||||||||| |||||
Sbjct 428 GGGAAGA-GGCTTGAGATTCTAGCTGAAGAGCTATTGGACTTGTTGTGTGAGAATCTAGG 486
Query 420 GTTGGAGAAAGGGTACTTGAAGAAGGTGTTTCATGGGACAAAGGGCCCAACTTTCGGGAC 479
||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | |||
Sbjct 487 GTTGGAGAAAGGGTACTTGAAGAAGGTGTTTCATGGGACAACGGGTCCAACTTTTGCGAC 546
Query 480 AAAGGTTAGCAACTATCCACCATGTCCTAAACCGGAGATGATCAAAGGGCTTAGGGCTCA 539
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 547 AAAGCTTAGCAACTATCCACCATGTCCTAAACCAGAGATGATCAAAGGGCTTAGGGCTCA 606
Query 540 CACAGATGCAGGAGGCCTTATTTTGCTGTTTCAAGACGATAAGGTCAGTGGTCTTCAGCT 599
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 607 CACAGATGCAGGAGGCCTCATTTTGCTGTTTCAAGATGATAAGGTCAGTGGTCTCCAGCT 666
Query 600 TCTAAAAGATGGTGATTGGGTTGATGTTCCTCCTCTCAAGCATTCCATTGTCATCAACCT 659
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCTTAAAGATGGTGATTGGGTTGATGTTCCTCCTCTCAAGCATTCCATTGTCATCAACCT 726
Query 660 TGGTGACCAACTTGAGGTGATAACAAACGGGAAGTACAAGAGTGTAATGCACCGTGTGAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TGGTGACCAACTTGAGGTGATAACAAACGGGAAGTACAAGAGTGTAATGCACCGTGTGAT 786
Query 720 GACCCAAAAAGAAGGAAACAGGATGTCTATTGCGTCGTTCTACAACCCCGGAAGCGATGC 779
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 787 GACCCAGAAAGAAGGAAACAGGATGTCTATCGCGTCGTTTTACAACCCCGGAAGCGATGC 846
Query 780 CGAAATCTCTCCGGCAACATCTCTTGTGGATAAAGACTCAAAATACCCAAGCTTTGTGTT 839
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TGAGATCTCTCCGGCAACATCTCTTGTGGATAAAGACTCAAAATACCCAAGCTTTGTGTT 906
Query 840 TGATGACTACATGAAACTCTATGCCGGACTCAAGTTTCAGCCCAAGGAGCCACGGTTCGA 899
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 907 TGATGACTACATGAAACTCTATGCCGGACTCAAGTTTCAGGCCAAGGAGCCACGGTTCGA 966
Query 900 GGCGATGAAGAACGCTGAAGTAGCCGCAGATTTGAATCCGGTGGCCGCCGTCGAGACATT 959
||||||||| || ||||||| ||| || ||||||||||||||||| | || ||||||||
Sbjct 967 GGCGATGAAAAATGCTGAAGCAGCTGCGGATTTGAATCCGGTGGCTGTGGTTGAGACATT 1026
Query 960 CTAA 963
||||
Sbjct 1027 CTAA 1030
> AT1G62380.1 | Symbols: ACO2, ATACO2 | ACC oxidase 2 | chr1:23082170-23084253
FORWARD LENGTH=1318
Length=1318
Score = 893 bits (483), Expect = 0.0
Identities = 784/928 (84%), Gaps = 26/928 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAAGACCATTAAGTTTCCAGTTA-TCGACTTGTCTAAGCTCAATGGTAAAGAGAG 59
|||||||||| ||| |||||||||| || | |||||||| ||||||||||| |||||||
Sbjct 171 ATGGAGAAGAACATGAAGTTTCCAG-TAGTAGACTTGTCCAAGCTCAATGGGGAAGAGAG 229
Query 60 AGACCAAACCATGGCTTTGATCGAA-GATGCTTGTCAAAACTGGGGCTTCTTTGAGCTGG 118
|||||||||||||||| | ||| || || |||||| | || ||||||||||||||| | |
Sbjct 230 AGACCAAACCATGGCTCTAATC-AATGAAGCTTGTGAGAATTGGGGCTTCTTTGAGATAG 288
Query 119 TGAACCATGGACTACCATACGATC-TAATGGACAACATTGAGAGGATGACAAAGGAACAC 177
||||||||||| ||||| | || | |||||||||| || |||| |||||||||||| ||
Sbjct 289 TGAACCATGGATTACCACATGA-CTTAATGGACAAGATCGAGAAGATGACAAAGGACCAT 347
Query 178 TACAAGAAACAT---ATGGAACAAAAGTTCAAAGAAATGCTC-CGTTCCAAAGGTTTAGA 233
|||||| |||| | |||||||||||||| || |||||| | ||||||||||| ||
Sbjct 348 TACAAG--ACATGCCA-AGAACAAAAGTTCAATGACATGCTCAAG-TCCAAAGGTTTGGA 403
Query 234 TACTCTTGAGACCGAAGTCGAAGATGTTGATTGGGAAAGCACTTTCTACCTCCGCCATCT 293
|| ||||||||| |||||||||||||| ||||||||||||||||||||| | || || ||
Sbjct 404 TAATCTTGAGACAGAAGTCGAAGATGTCGATTGGGAAAGCACTTTCTACGTTCGTCACCT 463
Query 294 CCCTCAATCTAACCTCTACGACATCCCTGATATGTC-GAACGAATAC-CGATTGGCAATG 351
||||||||| || ||| | ||||| | ||| |||| | | |||||| || ||| |||
Sbjct 464 CCCTCAATCCAATCTCAATGACATTTCAGATGTGTCTG-ATGAATACAGGA-CGGCCATG 521
Query 352 AAGGATTTTGGAAAGATG-GTGGAGAATCTAGCAGAAGAGCTATTGGATTTGTTGTGTGA 410
|| || ||||| |||| | |||||||||| || || || | |||||| | |||||||
Sbjct 522 AAAGACTTTGGTAAGA-GACTGGAGAATCTTGCTGAGGATTTGTTGGATCTACTGTGTGA 580
Query 411 GAACCTAGGGTTGGAGAAAGGGTACTTGAAGAAGGTGTTTCATGGGACAAAGGGCCCAA- 469
||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| |||||||
Sbjct 581 GAATCTAGGGTTAGAGAAAGGGTATTTGAAGAAAGTGTTTCATGGAACAAAAGGCCCAAC 640
Query 470 CTTTCGGGACAAAGGTTAGCAACTATCCACCATGTCCTAAACCGGAGATGATCAAAGGGC 529
|||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 641 CTTT-GGGACAAAGGTGAGCAATTATCCACCATGTCCTAAACCAGAGATGATCAAAGGTC 699
Query 530 TTAGGGCTCACACAGATGCAGGAGGCCTTATTTTGCTGTTTCAAGACGATAAGGTCAGTG 589
||||||| ||||| |||||||||||| | || ||| ||||||||||||| ||||||||||
Sbjct 700 TTAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTGTTTCAAGACGACAAGGTCAGTG 759
Query 590 GTCTTCAGCTTCTAAAAGATGGTGATTGGGTTGATGTTCCTCCTCTCAAGCATTCCATTG 649
|||| |||||||| ||||||||||| ||| ||||||||||||||||||| || || ||||
Sbjct 760 GTCTCCAGCTTCTTAAAGATGGTGACTGGATTGATGTTCCTCCTCTCAACCACTCTATTG 819
Query 650 TCATCAACCTTGGTGACCAACTTGAGGTGATAACAAACGGGAAGTACAAGAGTGTAATGC 709
||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 820 TCATCAATCTTGGTGACCAACTTGAGGTGATAACCAACGGGAAGTATAAGAGTGTGCTGC 879
Query 710 ACCGTGTGATGACCCAAAAAGAAGGAAACAGGATGTCTATTGCGTCGTTCTACAACCCCG 769
|||||||| |||| ||| ||||||||||||||||||| |||| ||||| |||||||| |
Sbjct 880 ACCGTGTGGTGACTCAACAAGAAGGAAACAGGATGTCGGTTGCATCGTTTTACAACCCGG 939
Query 770 GAAGCGATGCCGAAATCTCTCCGGCAACATCTCTTGTGGATAAAGACTCAAAATACCCAA 829
|||||||||| || ||||| || || || || ||||| || ||||| || | ||||| |
Sbjct 940 GAAGCGATGCGGAGATCTCACCAGCTACTTCGCTTGTCGAGAAAGATTCCGAGTACCCGA 999
Query 830 GCTTT-GTGTTTGATGACTACATGAAACTCTATGCCGGACTCAAGTTTCAGCCCAAGGAG 888
| ||| || ||||||||||||||||| || ||||| || ||||||||||||||||||||
Sbjct 1000 G-TTTCGTCTTTGATGACTACATGAAGCTTTATGCAGGGGTCAAGTTTCAGCCCAAGGAG 1058
Query 889 CCACGGTTCG-AGGCGATGAAGAACGCT 915
|||||||||| || | |||||||| |||
Sbjct 1059 CCACGGTTCGCAG-CAATGAAGAATGCT 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5