BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910962

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21060.1 | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich pr...   126    1e-28
  AT2G33560.2 | Symbols: BUBR1 | BUB1-related (BUB1: budding unin...   110    1e-23


> AT2G21060.1 | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich 
protein 2B | chr2:9036793-9037650 REVERSE LENGTH=858
Length=858

 Score =  126 bits (68),  Expect = 1e-28
 Identities = 116/139 (83%), Gaps = 3/139 (2%)
 Strand=Plus/Plus

Query  77   GTGGTGACGATCTCTTCGTTCACCAGTC--C-ATTAGCTCTGAAAAATTTCGTAGCCTTA  133
            ||||||||||||||||||||||||||||  | || || ||||||  ||||||||||||  
Sbjct  169  GTGGTGACGATCTCTTCGTTCACCAGTCTTCCATCAGATCTGAAGGATTTCGTAGCCTCG  228

Query  134  CCGTTGATGAAGCTGTTGAGTTCAAGGTTGAGGTTGACAACGCCAGTCGTCTGAAGACTG  193
            | | ||| ||| ||||||||||| | ||||||||||||||| || | ||||  ||| || 
Sbjct  229  CAGCTGAGGAATCTGTTGAGTTCGACGTTGAGGTTGACAACTCCGGCCGTCCCAAGGCTA  288

Query  194  TTGAAGTTTCTGGACCCGA  212
            ||||||| |||||||||||
Sbjct  289  TTGAAGTGTCTGGACCCGA  307


> AT2G33560.2 | Symbols: BUBR1 | BUB1-related (BUB1: budding uninhibited 
by benzymidazol 1) | chr2:14213633-14215999 REVERSE 
LENGTH=1449
Length=1449

 Score =  110 bits (59),  Expect = 1e-23
 Identities = 64/66 (97%), Gaps = 2/66 (3%)
 Strand=Plus/Plus

Query  1    GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A  59
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  487  GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA  546

Query  60   TAAGAC  65
             |||||
Sbjct  547  -AAGAC  551



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5