BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910979
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12150.1 | Symbols: | Plant protein of unknown function (DU... 2669 0.0
AT1G12140.1 | Symbols: FMO GS-OX5 | flavin-monooxygenase glucos... 739 0.0
> AT1G12150.1 | Symbols: | Plant protein of unknown function (DUF827)
| chr1:4123530-4125648 REVERSE LENGTH=1759
Length=1759
Score = 2669 bits (1445), Expect = 0.0
Identities = 1581/1648 (96%), Gaps = 4/1648 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAACATTAGAGTACAAAAAGGTCCGGAATCTCCGAGGACGATGGAGGTGGGAGAA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 113 ATGGTGAACATTAGAGTACAAAAAGCTCCGGAATCTCCGAGGACGATGGAGGTGGGAGAA 172
Query 61 ATAGACACAAGAGCACCATTCCAATCGGTGAAAGCTGCGGTGAGCTTGTTCGGAGAAGTT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 ATAGACACAAGAGCACCGTTCCAATCGGTGAAAGCTGCGGTGAGCTTGTTCGGAGAAGTT 232
Query 121 GCAGTCTCTAGGCAAAGAAGTACTCCAAGGCGATCACGACTTTCCTCTGAGAGCGTTTGC 180
|||||||| | |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 233 GCAGTCTCAAAGCAAAGAAGTACTCCAAGGCGATCTCGACTCTCCTCTGAGAGCGTTTGC 292
Query 181 GACAAAGAAACACAGCTAATGCTGGTCCACAAGGAATTCATGAAGATCAAGCAAAAGCTT 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GACAAGGAAACACAGCTAATGCTGGTCCACAAGGAATTCATGAAGATCAAGCAAAAGCTT 352
Query 241 GACAACGCTGAGAGCACAAGATCTCGTGCTCTTGACGATCTCTCAAAGGCAAAGAAGACA 300
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 353 GACAACGCTGAGAGCACAAGATCTCGTGCTCTAGACGATCTCTCAAAGGCGAAGAAGACA 412
Query 301 ATGGAGGATCTTAGCAACAAACTTGAGACTGTCAACAAGTCCAAGCAATCCGCTATTGAC 360
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 413 ATGGAGGATCTTAGCAACAAACTTGAGACTGTCAACAAGTCTAAGCAATCAGCTATTGAC 472
Query 361 ACCAAAGAAATTGTCCAACAGCGCGAAGAACAGCTTGAGCATGATAAGTGTCATGGCTCT 420
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 473 ACCAAAGAAACTGTCCAACAGCGGGAAGAACAGCTTGAGCATGATAAGTGTCATGGCTCT 532
Query 421 CCTCCTCACCACCATGAACTTGACGTCGCTAGAGAACAATATATCTCTACCACCGTTGAA 480
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 533 CCTCCTCATCACCATGAACTTGACGTCGCTAGAGAACAATATATCTCCACCACCGTTGAA 592
Query 481 CTCGATGCTGCGAAACAACAGCTCAACAAAATTAGACAGAGCTTTGATTCCGCTATGGAT 540
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTGATGCTGCAAAACAGCAGCTCAACAAAATTAGACAGAGCTTTGATTCCGCTATGGAT 652
Query 541 TTCAAAGCCACGGCC-TACAACCAGGCTGCAGAAGCCCAACGTGCACTCCAAGTCAACTC 599
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 653 TTCAAAGCCACGGCCTTA-AACCAGGCTGCAGAAGCTCAACGTGCACTCCAAGTCAACTC 711
Query 600 CGCGAAAGTTAACGAGCTTTCCAAGGAGATATCGGATATGAAAGACGCGATTCATCAGCT 659
||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 712 CGCCAAAGTTAACGAGCTTTCTAAGGAGATTTCGGATATGAAAGATGCGATTCATCAGCT 771
Query 660 CAAGCTAGCGGCTGCTCAGAATCTGCAGGAGCACGCCAATATTGTGAAGGAAAAAGACGA 719
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 772 CAAGCTAGCGGCTGCTCAGAATCTGCAGGAGCACGCTAATATTGTTAAGGAAAAAGACGA 831
Query 720 TTTACGAGAGTGTTACAGAACTGCTGTTGAGGAGGCAGAGAAGAAACTGCTAGTGTTGAG 779
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 832 TTTACGAGAATGTTATAGAACTGCTGTTGAAGAGGCAGAGAAGAAACTGCTAGTGTTGAG 891
Query 780 GAAAGAATATGAGCCTGAGCTCTCAAGAACTCTTGAAGCCAAGCTGATAGAGACAACTTC 839
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 892 GAAAGAATATGAGCCTGAGCTCTCAAGAACTCTTGAAGCCAAGCTGTTAGAGACAACTTC 951
Query 840 GGAGATTGAGGTTTTACGGGAAGAGATGAAGAAAGCTCATGAATCAGAGATGAACACGGT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 AGAGATTGAGGTTTTACGGGAAGAGATGAAGAAAGCTCATGAATCAGAGATGAACACGGT 1011
Query 900 TAAAATCATTACAAACGAGCTTAATGAAGCAACGATGAGGCTACAGGAGGCTGCGGATGA 959
||| ||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1012 TAAGATCATTACAAATGAGCTTAATGAAGCAACGATGAGGCTACAAGAAGCTGCTGATGA 1071
Query 960 CGAATGCTCTCTCCGTAGCTTGGTGAATTCTCTCAGGATGGAACTagaagacttgagaag 1019
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 CGAATGCTCTCTCCGAAGTTTGGTGAATTCTCTCAGGATGGAACTAGAAGACTTGAGAAG 1131
Query 1020 agaacgcgaagagctgcagcagaaagaagcagagagattagagaTTGAGGAAACAAAAAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 AGAACGCGAAGAGCTGCAGCAGAAAGAAGCAGAGAGATTAGAGATTGAGGAAACAAAAAA 1191
Query 1080 GTTGGAAGCTCTCAAGGAAGAGAGCTTGAAACTGGAGCAAATGAAAACAGAAGCTATGGA 1139
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1192 GTTGGAAGCTCTCAAGCAAGAGAGCTTGAAACTGGAGCAAATGAAAACAGAAGCTATTGA 1251
Query 1140 AGCAAGAAAGGAAGCTGAAAATATGAATAGGAAGATAGAGAGTCTGAAGAAAGAAACCGA 1199
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1252 AGCAAGAAACGAAGCTGCAAATATGAATAGGAAGATAGAGAGTCTGAAGAAAGAAACAGA 1311
Query 1200 GGCTGCGATGATAGCTGCAGAGGAAGCTGAAAAGAGACTAGAGCTTGTTATAAGAGAAGT 1259
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 GGCCGCGATGATAGCTGCTGAGGAAGCTGAAAAGAGACTAGAGCTTGTTATAAGAGAAGT 1371
Query 1260 TGAAGAGGCGAAATCTGCTGAAGAGAAAGTCCGCGAAGAGATGAAAATGATATCTCAGAA 1319
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1372 GGAGGAGGCGAAATCCGCTGAAGAGAAAGTCCGCGAAGAGATGAAGATGATATCTCAGAA 1431
Query 1320 GCAAGAGAGTAAGAAACATGATGATGAATCATCTGGTTCAAAGATAAAAATCACAATTCA 1379
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1432 GCAAGAGAGCAAGAAACAAGATGAAGAATCATCTGGTTCAAAGATAAAAATCACAATTCA 1491
Query 1380 GGAGTTTGAATCTTTGAAACGTGGAGCAGGGGAAACAGAGACTGCAATAGAAGAGAAGTT 1439
|||||||||||||||||||| |||||||||||||||||| ||||||| ||| |||||||
Sbjct 1492 AGAGTTTGAATCTTTGAAACGAGGAGCAGGGGAAACAGAGGCTGCAATCGAAAAGAAGTT 1551
Query 1440 GGCAGCTATAGCAGCTGAGCTAGAAGAGATCAACAGAA-GAAAAGCCGAAGCGGATAATA 1498
|||| |||||||||||||||| ||||||||||||| || ||| |||||||||||||||||
Sbjct 1552 GGCAACTATAGCAGCTGAGCTTGAAGAGATCAACA-AACGAAGAGCCGAAGCGGATAATA 1610
Query 1499 TGTTGGGAGCGAACCTGAAAGCGATAGAGGAGATGAAGCAAGCAACGGAATTGGCTCAGA 1558
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 AGTTAGAAGCGAACCTGAAAGCGATAGAGGAGATGAAGCAAGCAACGGAATTGGCTCAGA 1670
Query 1559 AGTCAGCAGAATCTGCAGAAGCTGCAAAGAGAATGGTGGAAAGTGAGTTGCAGAGATGGC 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 AGTCAGCAGAATCTGCAGAAGCTGCAAAGAGAATGGTGGAAAGTGAGTTGCAGAGATGGC 1730
Query 1619 GTCAACAAGAAAATGTACAACATGCTTA 1646
||||||||||||||||||||| ||||||
Sbjct 1731 GTCAACAAGAAAATGTACAACTTGCTTA 1758
> AT1G12140.1 | Symbols: FMO GS-OX5 | flavin-monooxygenase glucosinolate
S-oxygenase 5 | chr1:4121369-4124595 FORWARD LENGTH=2146
Length=2146
Score = 739 bits (400), Expect = 0.0
Identities = 436/454 (96%), Gaps = 0/454 (0%)
Strand=Plus/Minus
Query 582 TGCACTCCAAGTCAACTCCGCGAAAGTTAACGAGCTTTCCAAGGAGATATCGGATATGAA 641
||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 2146 TGCACTCCAAGTCAACTCCGCCAAAGTTAACGAGCTTTCTAAGGAGATTTCGGATATGAA 2087
Query 642 AGACGCGATTCATCAGCTCAAGCTAGCGGCTGCTCAGAATCTGCAGGAGCACGCCAATAT 701
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2086 AGATGCGATTCATCAGCTCAAGCTAGCGGCTGCTCAGAATCTGCAGGAGCACGCTAATAT 2027
Query 702 TGTGAAGGAAAAAGACGATTTACGAGAGTGTTACAGAACTGCTGTTGAGGAGGCAGAGAA 761
||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 2026 TGTTAAGGAAAAAGACGATTTACGAGAATGTTATAGAACTGCTGTTGAAGAGGCAGAGAA 1967
Query 762 GAAACTGCTAGTGTTGAGGAAAGAATATGAGCCTGAGCTCTCAAGAACTCTTGAAGCCAA 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 GAAACTGCTAGTGTTGAGGAAAGAATATGAGCCTGAGCTCTCAAGAACTCTTGAAGCCAA 1907
Query 822 GCTGATAGAGACAACTTCGGAGATTGAGGTTTTACGGGAAGAGATGAAGAAAGCTCATGA 881
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 GCTGTTAGAGACAACTTCAGAGATTGAGGTTTTACGGGAAGAGATGAAGAAAGCTCATGA 1847
Query 882 ATCAGAGATGAACACGGTTAAAATCATTACAAACGAGCTTAATGAAGCAACGATGAGGCT 941
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1846 ATCAGAGATGAACACGGTTAAGATCATTACAAATGAGCTTAATGAAGCAACGATGAGGCT 1787
Query 942 ACAGGAGGCTGCGGATGACGAATGCTCTCTCCGTAGCTTGGTGAATTCTCTCAGGATGGA 1001
||| || ||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1786 ACAAGAAGCTGCTGATGACGAATGCTCTCTCCGAAGTTTGGTGAATTCTCTCAGGATGGA 1727
Query 1002 ACTagaagacttgagaagagaacgcgaagagctg 1035
||||||||||||||||||||||||||||||||||
Sbjct 1726 ACTAGAAGACTTGAGAAGAGAACGCGAAGAGCTG 1693
Score = 243 bits (131), Expect = 6e-63
Identities = 133/134 (99%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 1513 CTGAAAGCGATAGAGGAGATGAAGCAAGCAACGGAATTGGCTCAGAAGTCAGCAGAATCT 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 CTGAAAGCGATAGAGGAGATGAAGCAAGCAACGGAATTGGCTCAGAAGTCAGCAGAATCT 1636
Query 1573 GCAGAAGCTGCAAAGAGAATGGTGGAAAGTGAGTTGCAGAGATGGCGTCAACAAGAAAAT 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 GCAGAAGCTGCAAAGAGAATGGTGGAAAGTGAGTTGCAGAGATGGCGTCAACAAGAAAAT 1576
Query 1633 GTACAACATGCTTA 1646
||||||| ||||||
Sbjct 1575 GTACAACTTGCTTA 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81375083445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5