BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg910982

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12180.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   327    3e-89


> AT1G12180.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: HSP20-like chaperones superfamily protein (TAIR:AT5G47600.1); 
Has 8 Blast hits to 8 proteins in 3 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4130421-4131137 
FORWARD LENGTH=613
Length=613

 Score =  327 bits (177),  Expect = 3e-89
 Identities = 306/366 (84%), Gaps = 18/366 (5%)
 Strand=Plus/Plus

Query  1    ATGAGTGCATCCTCCTCCAGAGAATCTACCTCCGCCGCCGGTGATAGAAACTTCAAAGTG  60
            ||||||| ||||||||| || ||| | |||||||||||||||||| |||||| |||| ||
Sbjct  34   ATGAGTGGATCCTCCTCGAGGGAAGCCACCTCCGCCGCCGGTGATGGAAACTACAAACTG  93

Query  61   GAGATAAAAGAATACGGTGGAGGTAAAGGACCAGTCCGGTAtttttttGATGAGGATTCG  120
            ||||||||||||||||||||||||||||||||||||||||  |||||| | ||||| |||
Sbjct  94   GAGATAAAAGAATACGGTGGAGGTAAAGGACCAGTCCGGTGGTTTTTTAAGGAGGACTCG  153

Query  121  TGCATTGCAAGGGTAGATGTTCCGGGTTGTTCAAG-ATTTTCCAGT-GTT-CACCCATTG  177
            ||| |||||| | |||||||||||||||||||| | |    ||||  ||| || |  |||
Sbjct  154  TGCGTTGCAATGATAGATGTTCCGGGTTGTTCA-GTAGCACCCAGCAGTTACAGC--TTG  210

Query  178  GAGAAAACCAACGTAGGGTTTCGAACAGAAGAAGTAGACGAGAACAACAAC-CCCT----  232
            ||||||||| |||||||||||| |||||||||||||||| |||||||| || ||||    
Sbjct  211  GAGAAAACCCACGTAGGGTTTCAAACAGAAGAAGTAGACCAGAACAACCACTCCCTACCC  270

Query  233  -TACGCACATAC-TCCGGCTTCGTCAAGTTCCCAACTGTTTACGATCCGAAGAATGCTGA  290
             ||||||||||| || |||||||||||||||||| | ||||||||| ||||| ||||| |
Sbjct  271  GTACGCACATACATC-GGCTTCGTCAAGTTCCCAGCGGTTTACGATTCGAAGCATGCTAA  329

Query  291  -ACTTAAGGTTGAT-AGTGGCGTGCTCTGGGTCACCGTTCCTAGGAAACAACACCGCCAA  348
             | ||  ||||| | | |||||| |||||| |||||||| ||| | | |||  |||||||
Sbjct  330  GATTTG-GGTTG-TCAATGGCGTACTCTGGATCACCGTTACTAAGCACCAAGGCCGCCAA  387

Query  349  GGTTAA  354
            ||||||
Sbjct  388  GGTTAA  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16588357170


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5