BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910991
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12270.1 | Symbols: Hop1 | stress-inducible protein, putativ... 505 2e-142
AT1G62740.1 | Symbols: Hop2 | stress-inducible protein, putativ... 222 2e-57
> AT1G12270.1 | Symbols: Hop1 | stress-inducible protein, putative
| chr1:4172075-4174775 FORWARD LENGTH=1949
Length=1949
Score = 505 bits (273), Expect = 2e-142
Identities = 320/342 (94%), Gaps = 6/342 (2%)
Strand=Plus/Plus
Query 4 GCTGAAGCTAAAGGAAACGCTGCTTTCTCTTCCGGTGACTTCACCACCGCTAT-AACTCA 62
||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 43 GCTAAAGCTAAAGGAAACGCTGCTTTCTCTTCCGGTGACTTCACCACGGCTATAAAC-CA 101
Query 63 CTTCACCGAAGCCATAACTCTTGCTCCAACCAACCACGTCCTCTTCTCAAACCGTTCCGC 122
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 102 CTTCACCGAAGCCATAGCTCTTGCTCCAACCAATCACGTCCTCTTCTCAAACCGTTCCGC 161
Query 123 TGCTCACGCGTCGCTTCACCAATACGCCGAAGCTCTCTCCGATGCGAAAGAGACG-TTAA 181
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 162 TGCTCACGCGTCGCTTCATCAATACGCCGAAGCTCTCTCCGATGCGAAAGAGACGATTAA 221
Query 182 AACTCAAACCGTATTGGCCTAAGGGTTATAGCC-TACTCGGAGCTGCTTACTTAGGGCTA 240
| |||||||||||||||||||| |||||||||| | ||||| |||||| | |||||| ||
Sbjct 222 A-CTCAAACCGTATTGGCCTAAAGGTTATAGCCGT-CTCGGTGCTGCTCATTTAGGGTTA 279
Query 241 AACCAGTTCGAGTTAGCCGTCACTGCTTATAAGAAGGGTTTGGATATCGATCCGACTAAC 300
|||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 280 AACCAGTTTGAGTTAGCCGTCACTGCTTATAAGAAAGGTTTAGATGTCGATCCGACTAAC 339
Query 301 GAGGCGTTGAGATCTGGATTGGTTGATGCGGAGGCGTCTGTT 342
|||||||||| ||||||||||| |||||||||||||||||||
Sbjct 340 GAGGCGTTGAAATCTGGATTGGCTGATGCGGAGGCGTCTGTT 381
> AT1G62740.1 | Symbols: Hop2 | stress-inducible protein, putative
| chr1:23230956-23233543 FORWARD LENGTH=1949
Length=1949
Score = 222 bits (120), Expect = 2e-57
Identities = 275/346 (79%), Gaps = 26/346 (8%)
Strand=Plus/Plus
Query 8 AAGCTAAAGGAAACGCTGCTTTCTCTTCCGGTGACTTC-A--CCACCGCTATAACTCACT 64
|||||||||||||||| |||||||| |||||||||||| | || ||| | ||| |||||
Sbjct 87 AAGCTAAAGGAAACGCAGCTTTCTCCTCCGGTGACTTCAATTCCGCCG-T-TAA-TCACT 143
Query 65 TCACCGAAGCCAT-AACTCTTGCTCCAACCAACCACGTCCTCTTCTCAAACCGTTCCGCT 123
||||||| || || ||| || | |||||||| ||||| |||||||||||||||||||||
Sbjct 144 TCACCGACGCAATCAAC-CTAACACCAACCAATCACGTTCTCTTCTCAAACCGTTCCGCT 202
Query 124 GCTCACGCGTCGCTTCACCAATACGCCGAAGCTCTCTCCGATGCGAAAGA-GAC-GTTAA 181
|||||||| |||||| | || |||| |||||||||||| || ||||| || ||| ||| |
Sbjct 203 GCTCACGCATCGCTTAATCACTACGACGAAGCTCTCTCAGACGCGAA-GAAGACTGTTGA 261
Query 182 AACTCAAACC-GTATTGGCCTAAGGGTTATAGCC-TACTCGGAGCTGCTTACTTAGGGCT 239
| || ||||| | ||||| || |||||||||| | ||||| |||||| ||||||| ||
Sbjct 262 A-CTTAAACCAG-ATTGGGGAAAAGGTTATAGCCGT-CTCGGTGCTGCTCACTTAGGTCT 318
Query 240 AAACCAGTTCGAGTTA-GCCGTC-ACTGCTTATAAGAA-GGGTTTG-GATATCGATCCGA 295
||| |||||||| | | ||||| | || ||| ||| ||| ||| ||| | ||||| |
Sbjct 319 AAATCAGTTCGA-TGAAGCCGTGGAG-GCGTATTCGAAAGGGCTTGAGAT-T-GATCCAA 374
Query 296 CTAACGAGGCGTT-GAGATCTGGATTGGTTGATGCGGAGGCGTCTG 340
|||||| | ||| || ||| || || | ||||||| | || ||||
Sbjct 375 GTAACGAAG-GTTTGAAATCAGGTTTAGCTGATGCGAAAGCTTCTG 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20961651333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5