BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg910999
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12350.1 | Symbols: ATCOAB, COAB | 4-phospho-panto-thenoylcy... 1546 0.0
AT5G02080.1 | Symbols: | DNA / pantothenate metabolism flavopr... 721 0.0
> AT1G12350.1 | Symbols: ATCOAB, COAB | 4-phospho-panto-thenoylcysteine
synthetase | chr1:4198413-4200802 FORWARD LENGTH=1279
Length=1279
Score = 1546 bits (837), Expect = 0.0
Identities = 916/955 (96%), Gaps = 2/955 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCGATCTCTGGATTGGTGGAAGATGAAATCAGTTCGTTTTTCGAATCGTCTCCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 ATGAGTTCGATCTCTGGATTGGTGGAAGATGAAATCAGTTCGTTTTTCGAATCGTCTCCA 216
Query 61 CCTCTGAAGAACAATGAAGAGATCGTAACTAAGCTTAATCAGTTCATTGAGCTGAA-TCA 119
|||||||||||||| |||||||||||| | || ||||||||||||||||||||||| ||
Sbjct 217 CCTCTGAAGAACAAGGAAGAGATCGTAGCCAATCTTAATCAGTTCATTGAGCTGAATTC- 275
Query 120 TTCGTGTGAAGGAGGGAAGAGGAGGATTGTATGTGTGACTTCAGGTGGAACTACAGTTCC 179
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TTCGTGTCAAGGAGGGATGAGGAGGATTGTATGTGTGACTTCAGGTGGAACTACAGTTCC 335
Query 180 ATTGGAGCAACGATGTGTAAGATACATTGATAATTTCAGCTCTGGTAATAGAGGTGCTGC 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 336 ATTGGAGCAACGATGTGTAAGATACATTGATAATTTCAGCTCTGGAAATAGAGGTGCTGC 395
Query 240 GTCTACTGAGAATTTCGTCAGGGCTGGATATGCTGTGATCTTTCTCTATAGGAGGGGAAC 299
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 396 TTCTACTGAGAATTTCGTCAAGGCTGGATATGCTGTGATATTTCTCTATAGGAGGGGAAC 455
Query 300 TTGTCAACCCTATTGCCGGTATCTTCCTGATGATCCATTCCTCGAATGTTTTGAGTTTCC 359
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 456 TTGTCAACCGTATTGCCGGTATCTTCCTGATGATCCATTCCTTGAATGTTTTGAGTTTCC 515
Query 360 AGATGCCAAAAACATTCAAGTTCATGGGTCACATTCAGAAGCTGTGAAGATGGCTGTTAT 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 516 AGATGCCAAAAACATTCAAGTTCATGGGTCACATTCAGGAGCTGTGAAGATGGCTGTTAT 575
Query 420 GGACCAGCAAGCTGCAGTTGCAGAAGGTCGCTTGCTAAAACTCCCATTCTCAACCATATA 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 576 GGACCAGCAAGCTGCAGTTGCAGAAGGTCGCTTGCTTAAACTCCCATTCTCAACCATATA 635
Query 480 TGAATATCTCCAGATGTTGCGGTTGATTGCAACGGTCTTAAAAGATGTCGGTCCATGTTC 539
|||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||
Sbjct 636 TGAATATCTCCAGATGTTGCGGTTGATTGCTACGATATTGAAAGATGTCGGTCCATGTTC 695
Query 540 AATGTTTTATCTTGCTGCTGCTGTATCAGACTTTTATGTGCCATGGACGAGCATGACAGA 599
|||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 696 GATGTTTTATCTTGCTGCTGCTGTATCTGACTTCTATGTGCCATGGTTAAGCATGACAGA 755
Query 600 GCACAAAATAGAATCAGGATCTGGTCCTTTGGACATAAGACTAGCTCAAGTCCCTAAAAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GCACAAAATAGAATCAGGATCTGGTCCTTTGGACATAAGACTAGCTCAAGTCCCTAAAAT 815
Query 660 GCTTTCAATCTTGAGATCAAATTGGGCTCCAAAGGCATTCTGCATATCATTCAAGCTTGA 719
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 816 GCTTTCAATCTTGAGATCAAATTGGGCTCCAAAGGCTTTCTGCATATCATTCAAGCTTGA 875
Query 720 GACAGACTCAAAGATTTTGATAGAGAAGGCTACAAAGGCTCTACAGAAATACAAAGTGCA 779
||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||
Sbjct 876 GACAGACTCAAAGATTTTGCTAGAGAAAGCTACAAAGGCTTTACAAAAATACAAAGTGCA 935
Query 780 CGCTGTTGTAGCAAATGAGCTATTAACGCGTAAGGAGGAGGTTGTGGTTGTTTCAAGTAG 839
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 936 CGCAGTTGTAGCAAATGAACTATTAACGCGTAAGGAGGAAGTTGTGGTTGTTTCAAGTAG 995
Query 840 CGGTAATGTTGTGGTGAGACGTGATAGCAATAAGCCTGAATCCATCGTAGAAGATAATCT 899
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 996 CGGTAATGTTGTGGTGAGACGTGATAGCAATAAGCCGGAATCTATCGTAGAAGATAATCT 1055
Query 900 GATTCGTCTCATCGTAGATCGACATTCAACATACATCAAAGAATCTCACACTTGA 954
||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1056 CATTCGTCTCCTCGTAGATCGACATTCAACATACATCAAAGAATCTCTCACTTGA 1110
> AT5G02080.1 | Symbols: | DNA / pantothenate metabolism flavoprotein
| chr5:409811-411557 FORWARD LENGTH=813
Length=813
Score = 721 bits (390), Expect = 0.0
Identities = 468/505 (93%), Gaps = 8/505 (2%)
Strand=Plus/Plus
Query 449 GCTTGCTAAAACTCCCATTCTCAACCATATATGAATATCTCCAGATGTTGCGGTTGATTG 508
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 308 GCTTACTAAAACTCCCATTCTCAACCATATATGAGTATCTTCAGATGTTGCGGTTGATTG 367
Query 509 CA-ACGGTC-TTAAAAGATGTCGGTCCATGTTCAATGTTTTATCTTGCTGCTGCTGTATC 566
|| | || | || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 368 CAGA-GG-CATTGAAAGATGTTGGTCCATGTTCAATGTTTTATCTTGCTGCTGCTGTATC 425
Query 567 AGACTTTTATGTGCCATGGACGAGCATGACAGAGCACAAAATAGAATCAGGATCTGGTCC 626
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 426 TGACTTCTATGTGCCATGGAAGAGCATGACAGAGCACAAAATAGAATCAGGATCTGGTCC 485
Query 627 TTTGGACATAAGACTAGCTCAAGTCCCTAAAATGCTTTCAATCTTGAGATCAAATTGGGC 686
||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 486 TTTAGACATAAGACTAGCTCAAGTCCCTAAAATGCTATCAGTCTTGAGATCAAATTGGGC 545
Query 687 TCCAAAGGCATTCTGCATATCATTCAAGCTTGAGACAGACTCAAAGATTTTGATAGAGAA 746
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 546 TCCAAAGGCCTTCTGCATATCATTCAAGCTTGAGACAGACTCAAAGATTCTGATGGAGAA 605
Query 747 GGCTACAAAGGCTCTACAG-AAATACAAAGTGCACGCTGTTGTAGCAAATGAGCTATTAA 805
|||||||||||||||| || ||||||||||||||||| |||||||| |||||||||| ||
Sbjct 606 GGCTACAAAGGCTCTA-AGAAAATACAAAGTGCACGCAGTTGTAGCCAATGAGCTATCAA 664
Query 806 CGCGTAAGGAGGAGGTTGTGGTTGTTTCAAGTAGCGGTAATGTTGTGGTGAGACGTG-AT 864
| |||||||| || ||||||||||||||||| ||||||||||||||||| ||||| | ||
Sbjct 665 CCCGTAAGGAAGAAGTTGTGGTTGTTTCAAGCAGCGGTAATGTTGTGGTTAGACGCGAAT 724
Query 865 AGCAATAAGCCTGAATCCATCGTAGAAGATAATCTGATTCGTCTCATCGTAGATCGACAT 924
|| ||||||||||||| | || ||||||||||| ||||||||||||||||||||||||
Sbjct 725 -GCGATAAGCCTGAATCTTTTGTTGAAGATAATCTCATTCGTCTCATCGTAGATCGACAT 783
Query 925 TCAACATACATCAAAGAATCTCACA 949
|||||||||||||||||||||||||
Sbjct 784 TCAACATACATCAAAGAATCTCACA 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5