BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911014

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09650.1 | Symbols:  | F-box and associated interaction doma...   396    1e-109
  AT1G12490.1 | Symbols:  | F-box associated ubiquitination effec...   241    6e-63 


> AT1G09650.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:3125807-3127284 FORWARD LENGTH=1478
Length=1478

 Score =  396 bits (214),  Expect = 1e-109
 Identities = 365/434 (84%), Gaps = 25/434 (6%)
 Strand=Plus/Plus

Query  110   TTGGATTCGGTAAAGACAAAATCACGGGCACATACAAACCCGTTTGGTTATACAGTTCTT  169
             |||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  ||| 
Sbjct  671   TTGGATTCGGTAAAGACAAACTCACAGGCACATACAAGCCCGTTTGGTTATACAACTCTA  730

Query  170   TAGAAATTGGCCTTGAAAACGCGAGGTTTTCGACTTTAACTACATGCGAGGTTTTCGACT  229
             ||||||||||||| | |||    |      || |  | ||||||||||||||||||||||
Sbjct  731   TAGAAATTGGCCTAG-AAA----A------CG-C--T-ACTACATGCGAGGTTTTCGACT  775

Query  230   TTAACACCGACGCTTGGAGGTATGTTTCTCCAGCCGCTCCCTATCGGGTTTTTGGTAACT  289
             ||| |||| ||||||||||||||||||| ||||| ||||| ||| || || |||||  | 
Sbjct  776   TTAGCACCAACGCTTGGAGGTATGTTTCACCAGCTGCTCCTTATAGGATTGTTGGTTGCC  835

Query  290   CCAAACCTATTTGTATAGATGGGTCGCTTCATTGGTTCAATGACTGCGAGGAAACCAAAA  349
             ||  |||| | ||  ||||||||||||||||||||||||  || ||||||||||||||||
Sbjct  836   CCGCACCTGTCTGCGTAGATGGGTCGCTTCATTGGTTCACCGAGTGCGAGGAAACCAAAA  895

Query  350   TTCTATCGTTCGATCTGCACACCGAAACGTTTCAAGTGGTCTCTAAAGCTCCCTTTACAA  409
             |||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||| | |
Sbjct  896   TTCTTTCGTTCGATCTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCCA  955

Query  410   ATGTAAACGCTTTTGATCATTGTCATGTGCAATCTCGACAACCGCTTCTGCGTTTCCAAG  469
             ||||| | |  || ||| || ||||||||||| |||||||||||||| ||||||||| ||
Sbjct  956   ATGTAGATGGATTCGAT-ATAGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAG  1014

Query  470   ATGAA-CTG-----GC---TGATATGGTCATTCAATTCAGGCAACAAGACATGGCACAAA  520
             ||||| |||      |   |||||||||||||||||||||| ||||||||||||||||||
Sbjct  1015  ATGAAGCTGCCCAACCAAGTGATATGGTCATTCAATTCAGGTAACAAGACATGGCACAAA  1074

Query  521   ATGTGTTCCATTAA  534
             ||||||||||||||
Sbjct  1075  ATGTGTTCCATTAA  1088


> AT1G12490.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr1:4260783-4261869 FORWARD LENGTH=1059
Length=1059

 Score =  241 bits (130),  Expect = 6e-63
 Identities = 183/207 (88%), Gaps = 10/207 (5%)
 Strand=Plus/Plus

Query  337  GAGGAAACCAAAATTCTATCGTTCGATCTGCACACCGAAACGTTTCAAGTGGTCTCTAAA  396
            |||||||||||||||||||| |||||||| ||||| ||||| |||| |||||||||||||
Sbjct  628  GAGGAAACCAAAATTCTATCTTTCGATCTTCACACTGAAACCTTTCGAGTGGTCTCTAAA  687

Query  397  GCTCCCTTTACAAATGTAAACGCTTTTGATCATTGTCATGTGCAATCTCGACAACCGCTT  456
            ||||| ||||| |||||||| ||||||||| || |||||||||||||||| |||||||||
Sbjct  688  GCTCCTTTTACCAATGTAAAAGCTTTTGAT-ATCGTCATGTGCAATCTCGGCAACCGCTT  746

Query  457  CTGCGTTTCCAAGATGAACTGG------C---TGATATGGTCATTCAATTCAGGCAACAA  507
             ||||||||| ||| |||||||      |   ||||||||||||||||||||||||||||
Sbjct  747  GTGCGTTTCCGAGAAGAACTGGCCCAACCAAGTGATATGGTCATTCAATTCAGGCAACAA  806

Query  508  GACATGGCACAAAATGTGTTCCATTAA  534
            ||||||||||||||||| |||||||||
Sbjct  807  GACATGGCACAAAATGTTTTCCATTAA  833


 Score =  195 bits (105),  Expect = 5e-49
 Identities = 154/174 (89%), Gaps = 17/174 (10%)
 Strand=Plus/Plus

Query  105  TGATATTGGATTCGGTAAAGACAAAATCACGGGCACATACAAACCCGTTTGGTTATACAG  164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  471  TGATATTGGATTCGGTAAAGACAAAATCACGGGCACATACAAACCCGTTTGGTTATACAA  530

Query  165  TTCTTTAGAAATTGGCCTTGAAAACGCGAGGTTTTCGACTTTAACTACATGCGAGGTTTT  224
            |||||||||||||||||||||||||||    |     |||  | | |  |||||||||||
Sbjct  531  TTCTTTAGAAATTGGCCTTGAAAACGC----T-----ACT--A-C-A--TGCGAGGTTTT  575

Query  225  CGACTTTAACACCGACGCTTGGAGGTATGTTTCTCC-AGCCGCTCCCTATCGGG  277
            ||||||||||||| |||||||||| ||||||||||| | |||||||||||||||
Sbjct  576  CGACTTTAACACCAACGCTTGGAGATATGTTTCTCCGA-CCGCTCCCTATCGGG  628



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5