BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911017

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12530.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   726    0.0  


> AT1G12530.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G56420.1); 
Has 54 Blast hits to 53 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4268986-4270787 
REVERSE LENGTH=734
Length=734

 Score =  726 bits (393),  Expect = 0.0
 Identities = 471/509 (93%), Gaps = 4/509 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTATGGCGAGGAAGATAAGCAAAGAGGAAGTTGTAGAGAAGCTTAAGGACGACGGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  20   ATGGGTATGGCGAGGAAGATAAGCAAAGAGGAAGTTGTAGAGAAGCTTAAGGACGACGGA  79

Query  61   GATTTTGATCGCCTTCGTCTTAAAATCATACGCCGCCTCAAAGATAACGAGGAATTACGG  120
            ||||||||||| || ||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct  80   GATTTTGATCGTCTCCGTCTCAAAATCATTCGCCGCCTCAAAGAAAACGAGGATTTACGG  139

Query  121  AACAACATGATAGCAATTGTCAAGGAGTCAACAGCTTTGAAACGACAGGGTGCTCAAAAT  180
            || || |||||| || ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct  140  AATAATATGATATCAGTTGTCAAGGAGTCAACATCTTTGAAACGACATGGTGCTCAAAAT  199

Query  181  ATGAAAACCAGGCAACTTTCTGATGCGATATTCGAAGAAGTCGGGAGCAAGATGCTAAGC  240
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  200  ATGAAAACCAGGCAACTCTCTGATGCGATATTCGAAGAAGTCGGGAGCAAGATGCTAAGC  259

Query  241  CAGCTCTCAGATGGGTTATGGGGGATAATAAGATCAGAGGACGGGATGAAGAAAGAAATC  300
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  260  CAGCTCTCAGATGGTTTATGGGGGATAATAAGATCAGAAGACGGGATGAAGAATGAAATC  319

Query  301  AGAGAAACCGTGCAATCCGTCTACGCCACATTATCTAACCCGGGAGGCGAGAAATGTGGA  360
            ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct  320  AGAGAAACCGTTCAATCCGTCTACGCCACATTATCTAACCCGAGAGGCGAGAAACGCGGA  379

Query  361  ACATCAGCTAGA-AAAGTGGAACATAAGATTCCAACACCATTCCCAGAAACAAGAGCTGA  419
            ||||| |||||| ||| |||||||||||||||||||||||     |||| ||||| ||||
Sbjct  380  ACATCCGCTAGAGAAA-TGGAACATAAGATTCCAACACCAAAAAAAGAAGCAAGAACTGA  438

Query  420  TTCCAACACTAGTCCAGCGAGTAAACAGAAGCAAGAGGTGGTTCAAAG-AGTTGTAGAAG  478
            || |||||| ||||||||||||||||||||||||||| || || |||| || ||||||||
Sbjct  439  TTTCAACACCAGTCCAGCGAGTAAACAGAAGCAAGAGCTGATT-AAAGGAGCTGTAGAAG  497

Query  479  ATAACAAAGGAGAAGCATGTAGTGATGAT  507
            ||||||||||||| |||||||||||||||
Sbjct  498  ATAACAAAGGAGAGGCATGTAGTGATGAT  526


 Score = 99.0 bits (53),  Expect = 4e-20
 Identities = 69/76 (91%), Gaps = 3/76 (4%)
 Strand=Plus/Plus

Query  471  TGTAGAAGATAACAAAGGAGAAGCATGTAGTGATGATAATGAAGAAGATCCTGAACTCCC  530
            |||| ||||||||||||||||||||| || |||||||   ||||||||||||||||||||
Sbjct  526  TGTACAAGATAACAAAGGAGAAGCATATAATGATGAT---GAAGAAGATCCTGAACTCCC  582

Query  531  TCCTGGTTTTGGCTAA  546
            |||||| |||||||||
Sbjct  583  TCCTGGCTTTGGCTAA  598



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5