BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911021
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12570.1 | Symbols: | Glucose-methanol-choline (GMC) oxidor... 2771 0.0
> AT1G12570.1 | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase
family protein | chr1:4277993-4280862 REVERSE LENGTH=2027
Length=2027
Score = 2771 bits (1500), Expect = 0.0
Identities = 1647/1720 (96%), Gaps = 2/1720 (0%)
Strand=Plus/Plus
Query 1 ATGATGGATAGATTTTGGTCATGGAGATTGTTTGTTGCTCTTC-CTCTTTTCCTCCATTC 59
|||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||
Sbjct 110 ATGATGGATAGATTTTGGTCATGGAGATTGTTTGTTGCTC-TCTCTCTTTTTCTCCATTC 168
Query 60 TCCAATTTGTTCTTCTGACAAAGCTCCAAACTACTCCTTCATGCGGGACGCGACAGGAAG 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 169 TCCAATTTGTTCTTCTGACAAAGCTCCGAACTACTCCTTCATGCGGGACGCGACAGGAAG 228
Query 120 TCCAACAACGTCGTACTACGACTATATCATCATCGGTGGTGGGACCGCAGGGTGCCCTCT 179
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 229 TCCTACAACGTCGTACTACGACTATATCATCATCGGTGGTGGGACTGCCGGGTGCCCTCT 288
Query 180 AGCCGCAACGCTGTCTCAAAACGCTAGCGTTTTGCTGCTCGAACGCGGTGGCGCACCGTA 239
|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 289 AGCCGCAACGCTGTCTCAAAACGCCAGCGTTTTGCTGCTCGAACGCGGTGACTCACCGTA 348
Query 240 CAATAACCCTAACATCACGAGCCTATCGGCTTTCGGAGCCGCTCTTTCTGACCTGTCTGA 299
||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 349 CAATAACCCCAACATCACGAGGCTCTCGGCTTTCGGAGCCGCTCTCTCTGACCTGTCTGA 408
Query 300 GACCTCACCATCTCAGCGTTTTGTATCGGAAGACGGCGTCATTAATGCACGTGCTCGAGT 359
| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||
Sbjct 409 GTCCTCACCATCTCAGCGTTTTGTATCAGAAGATGGTGTCATTAATGCACGTGCTCGGGT 468
Query 360 TCTGGGCGGCGGAAGCGCTCTCAACGCCGGGTTCTATACACGTGCCGGCACCAAATACGT 419
||| || ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 469 TCTCGGTGGCGGAAGCGCTCTCAACGCCGGCTTCTATACACGTGCGGGCACTAAATACGT 528
Query 420 TAGGAACATGGGTTGGGACGGAGCGCTAGCGAACGAGTCGTACCAGTGGGTAGAAGCTAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 529 TAGGAACATGGGTTGGGACGGAGCGCTAGCGAACGAGTCGTACCAGTGGGTTGAAGCTAA 588
Query 480 AGTGGCGTTTCAGCCTCCGATGGGGCGGTGGCAAACCGCCGTGAGAGACGGCTTATTGGA 539
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 589 GGTGGCGTTTCAGCCTCCGATGGGGCGGTGGCAAACGGCCGTGAGAGACGGCTTATTGGA 648
Query 540 GGCTGGGATTGTCCCTAATAATGGTTTCACTTATGATCATATCAATGGCACCAAATTTGG 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 649 GGCTGGGATTGTCCCTAATAATGGTTTCACCTATGATCATATCAATGGCACCAAATTTGG 708
Query 600 CGGTACTATTTTTGACCGCAACGGCCATAGACACACCGCCGCCGATTTGTTAGAGTATGC 659
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 709 CGGTACTATTTTTGACCGCAACGGCAATAGACACACCGCCGCCGATTTGTTAGAGTATGC 768
Query 660 CGACCCTAAGGATATTACCGTCCTTTTGCATGCCACCGTACATCGGATCTTGTTTCGTAC 719
||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 769 CGATCCTAAGGGTATTACCGTCCTTTTGCATGCCACCGTCCACCGGATCTTGTTTCGTAC 828
Query 720 TCGAGGTACGACCAAGCCAATAGCCAACGGAGTTGTGTACCGAGACCGGACTGGTCAGGC 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 829 TCGAGGTACGACCAAGCCAATAGCCAACGGAGTTGTGTACCGAGACCGGACCGGTCAGGC 888
Query 780 TCACCGAGCTTACCTAAAGGAAGGCGCATTGAGTGAGATCATCCTATCGGCCGGAACCCT 839
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 889 TCATAGAGCTTACCTAAAGGAAGGCGCCTTGAGTGAGATCATCCTATCGGCCGGAACCCT 948
Query 840 AGGGAGCCCACAACTTCTTATGCTAAGCGGTGTCGGCCCATTGGCTCAATTAGAGGCCCA 899
||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||||
Sbjct 949 AGGGAGCCCACAACTTCTTATGCTAAGTGGTGTTGGCCCATCGGCTCAATTACAGGCCCA 1008
Query 900 AAACATCACGGTGGTGATGGACCAGCCTCATGTGGGTCAAGACATGTATGACAACCCTAT 959
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1009 AAACATCACGGTGGTGATGGACCAGCCTCATGTGGGTCAAGGCATGTATGACAACCCTAT 1068
Query 960 GAATGCCGTGTTCGTTCCTTCTCCAGTCCCCGTTGAGGTCTCACTCATTGAGGTTGTTGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GAATGCCGTGTTCGTTCCTTCTCCAGTCCCCGTTGAGGTCTCACTCATTGAGGTTGTTGG 1128
Query 1020 CATTACCGGCGAAGGAACATATATCGAAGCTGCCGGTGGCGAAAATTTTGGAGGAGGTGG 1079
|||||||| |||||||||||| ||||||| |||||||| ||||||||||| ||||||||
Sbjct 1129 GATTACCGGGGAAGGAACATATGTCGAAGCCGCCGGTGGTGAAAATTTTGGCGGAGGTGG 1188
Query 1080 TGGTGGTTCTACTGGATCCTCCAGTACTAGAGACTACTATGCAATGTTTTCACCAAGGGC 1139
||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1189 TGGTGGTTCTAGTGGATCGTCCTCCACTAGAGACTACTATGCAATGTTTTCACCAAGGGC 1248
Query 1140 AACATTATTAGAGTCAAATTCAATGACCAAATTATCATCAGCCCAACCTTTTCAAGGAGG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 AACATTATTAGAGTCAAATTCAATGACCAAATTATCATCAGCCCAACCTTTTCAAGGAGG 1308
Query 1200 CTTCCTTTTAGAGAAAGTAATGGGCCCACTATCAACGGGTCATTTAGAGCTCAAGACTCG 1259
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1309 CTTCCTTTTAGAGAAAGTAATGGGCCCATTATCAACGGGTCATTTAGAGCTCAAGACCCG 1368
Query 1260 AAACCCAAAAGATAACCCGGTTGTGACTTTCAACTATTTCCAACATCCGGACGACCTAAA 1319
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1369 AAACCCAAAAGATAACCCGATTGTGACTTTCAACTATTTCCAACATCCTGACGACCTAAA 1428
Query 1320 ACGTTGTGTTCGAGGGATCCAAACCATAGAGAGAGTCGTGCAATCTAAAGCGTTTGCGAG 1379
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1429 ACGTTGTGTTCGAGGAATCCAAACCATAGAGAGAGTCGTGCAATCTAAAGCTTTTTCGAG 1488
Query 1380 GTATAAGTACGCAGATATGTCATTTGAGTATTTACTTAACCTCACCGCGAGTACCCCGGT 1439
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1489 GTATAAGTACGCAGATGTGTCATTTGAGTATTTACTTAACCTCACGGCGAGTACTCCTGT 1548
Query 1440 CAATCTAAGGCCGCCTCGTAGCGGTCCTGGAGCCTCGTTGCCTCCATCCGCTGAGGAATT 1499
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 1549 CAATCTAAGGCCGCCTCGCAGTGGTCCTGGAGCCTCGTTGCCTCCATCCGCAGAGGAATT 1608
Query 1500 TTGCCAGCATACAGTTACAACCATTTGGCATTACCATGGAGGATGCATTGTGGGCAGAGT 1559
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1609 TTGCCAACATACAGTTACAACCATTTGGCATTACCATGGAGGATGCGTTGTGGGCAGAGT 1668
Query 1560 GGTCGATGGGGATTATAAAGTTATTGGTATCGACCGGCTTAGAGTCATTGATATGTCGAC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 GGTCGATGGGGATTATAAAGTTATTGGTATCGACCGGCTTAGAGTCATTGATATGTCGAC 1728
Query 1620 CGTTGGTTATTGTCCCGGGACAAACCCTCAAGCCACGGTTATGATGCTTGGCAGGTACAT 1679
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1729 CGTTGGTTATTGTCCCGGGACAAATCCTCAAGCCACGGTTATGATGCTTGGCAGGTATAT 1788
Query 1680 GGGTGTGAGGATCCTGAGAGAGAGACTCACCAAGAAGTAG 1719
|||||||| |||| ||||||||||||||||||||||||||
Sbjct 1789 GGGTGTGAAGATCTTGAGAGAGAGACTCACCAAGAAGTAG 1828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84989522685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5