BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911029
Length=1983
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12800.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 867 0.0
> AT1G12800.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr1:4361551-4365331 REVERSE LENGTH=2673
Length=2673
Score = 867 bits (469), Expect = 0.0
Identities = 665/755 (88%), Gaps = 31/755 (4%)
Strand=Plus/Plus
Query 328 CCTGTTCCT-AAAGACGGAGTTAACCTT-GAAAAGCCAGTGATGAAAAAGCCAAACCCTG 385
|||||| || ||||| ||||| || || |||| |||||||||||| ||||||| |||||
Sbjct 554 CCTGTT-CTGAAAGATGGAGTCAA-GTTCGAAAGGCCAGTGATGAAGAAGCCAAGCCCTG 611
Query 386 TTTTGAAGAAGCCATTGGAGGCTGCTGCTGTTCCAGTTGCTGCTCCAAAGGTGCAGAGAT 445
|||||||||||||||||| || | || | |||||||||||||||||||||||||
Sbjct 612 TTTTGAAGAAGCCATTGGTGG-AG--GC---T---GTTGCTGCTCCAAAGGTGCAGAGAT 662
Query 446 TGCCTAATGTTATATTGAGAAAGCCGAGTTCGTTTTACGCGAGTAATGACAACGACGAGG 505
||||||||||||||||||||||||||||||||||||| | ||||||| | || ||||
Sbjct 663 TGCCTAATGTTATATTGAGAAAGCCGAGTTCGTTTTATACTAGTAATGGTGATGATGAGG 722
Query 506 AGTCTATGTTGCGGTTGAAACCGAATTTGACACTGAAAATGAGGAATGAGAGGGAAAATG 565
|||||| ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 723 AGTCTAAGTTGCGGTTGAAACCGAATCTGACATTGAAAATGAGAAATGAGAGGGAAAATG 782
Query 566 AGAGGTTTAGTGATATGACATTGTTGAGAAAACGGGAGCCAGTGAGCGTAGAAG-ACGAA 624
||||||||||||||||||||||||||||||||| ||| ||||||||||||| | | |||
Sbjct 783 AGAGGTTTAGTGATATGACATTGTTGAGAAAACCGGAACCAGTGAGCGTAGTTGCA-GAA 841
Query 625 AATGCTGAAGATAAGCCTCTTTCTGATGATTTAACTATGGAGGAAGGAGAACAAGAAGAT 684
| | ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 842 GA-G--GAAGACAAGCCTCTTTCTGATGATTTAACTATGGAGGAAGGAGAACAGGAAGGT 898
Query 685 GGAACATATTCACAGTATACTCTTTTGGAGAAGCCAGAAGCGAGGCTCGAGCCTATCAAT 744
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 899 GGAACATATTCACAGTATACTCTTTTGGAGAAGCCAGAAGCGAGGCTCCAGCCTGTCAAT 958
Query 745 GTAGAAGAGGTAGTTGGAGATAGCGGAGCAGTGGAATCATCAGAGATAGAAAACAACTCA 804
|||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||
Sbjct 959 GTAGAAGAGGAAGTTGGAGATAGCGGAGGAGTGGAATCATCTGAGATAGTAAACAACTCA 1018
Query 805 ATTCAGAAGCCAGAAGCAAGGCTC-GAGCCTGTGAATGTAGAAGAGGAAGTTGGAGATAG 863
|||||||||||||||||||||| | |||| || ||| ||||| ||||||||| ||||||
Sbjct 1019 ATTCAGAAGCCAGAAGCAAGGC-CAGAGCTTGAGAACATAGAAAAGGAAGTTGCAGATAG 1077
Query 864 CGGAGCTGCAGAATCATCAGAGATAGAAAATAACTCTATTCCAACTGAAATGCAGCTTAA 923
||||| | |||||||| |||||||||||||| || |||||||||||||||||||| ||
Sbjct 1078 CGGAGTTTTGGAATCATCGGAGATAGAAAATAATTCAATTCCAACTGAAATGCAGCTCAA 1137
Query 924 AATCCAGAGGTCCTCGGGCTCCTCTGAGGAGAAAACCATTAACAGTGACTC-ACTTGAGA 982
| | ||| | | ||||||||||||||||| ||||||||||| || ||| ||||
Sbjct 1138 TAGCGAGA--T----G---TCCTCTGAGGAGAAAACTATTAACAGTGA-TCCACTCGAGA 1187
Query 983 GGATTCCTTCGAAACCAGTTTCTCAAACCATCGTAGAAGCTTCTTTACAAGGGAAACCAC 1042
| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1188 GAATTCCTTCGAAACCAATTTCTCAAACCATCGTCGAAGCTTCTTTACAAGGGAAACCAC 1247
Query 1043 AAAGGTTAGACCCGTCTTCTGCCGAGCCATCAGTT 1077
|||| |||||||||||||| || ||||||||||||
Sbjct 1248 AAAGATTAGACCCGTCTTCCGCTGAGCCATCAGTT 1282
Score = 632 bits (342), Expect = 3e-180
Identities = 374/390 (96%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 1084 GAAAATGATTGGAATAAGGCAGAGTCTCTAGTTAAGACGGAATTACGGGCAGATGTTGAG 1143
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1373 GAAAATGATTGGAATAAGGCAGAGTCTCTAGTTAAAACAGAATTACGAGCAGATGTTGAG 1432
Query 1144 CTAATAAGCTCGAGCACTAGAGGCTTTGCTGTTTCCTATGGATCTTTGATCGGATTTTTA 1203
|||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1433 CTAATAAGTTCAAGCACTAGAGGATTTGCTGTTTCCTATGGATCTTTGATTGGATTTTTA 1492
Query 1204 CCCTACCGGAACCTTGCAGCAAAATGGAAATTTCTCGCATTTGAATCATGGTTACGAAGA 1263
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1493 CCCTACCGGAACCTTGCAGCAAAATGGAAGTTTCTCGCATTTGAATCATGGTTAAGAAGA 1552
Query 1264 AAAGGTGTAGATCCATCATTGTATCGACAAAACCTTGGGGTAATTGGAGGTCAAGATGTC 1323
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 AAAGGTGTAGATCCATCACCGTATCGACAAAACCTTGGGGTAATTGGAGGTCAAGATGTC 1612
Query 1324 ACGAGTAAAGCTCCATCTCCAGATTCAAGCTTAGATTCTGAAGACGCTACAACGATCAAC 1383
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1613 ACGAGTAAATCTCCATCTCCAGATTCAAGCTTAGATTCTGAAGTCGCTACAACGATCAAC 1672
Query 1384 GGAGAAGTTTCTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATATGACAGAGAAAAG 1443
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1673 GGAGAAGTTTCTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATATGACAGAGAGAAG 1732
Query 1444 CAGAAGTTCCTGTCATCTTATGTTGGCCAG 1473
||||||||||||||||||| |||||| |||
Sbjct 1733 CAGAAGTTCCTGTCATCTTTTGTTGGTCAG 1762
Score = 562 bits (304), Expect = 5e-159
Identities = 340/358 (95%), Gaps = 0/358 (0%)
Strand=Plus/Plus
Query 1610 AGATTGTGGAAGCGAAAGTGCACCAGCTGGATTTTGCTCTTGAACGTATCTTCTTGTCGC 1669
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2028 AGATTGTGGAAGCGAAAGTGCACCAGCTAGATTTTGCTCTTGAACGTATCTTCTTGTCAT 2087
Query 1670 TAAAAGAAATCACGCCTGATCCACTAACCGAAGCCTTAGAATCTGTAGTTGGTGGTGATA 1729
|||||||||| ||||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct 2088 TAAAAGAAATTACGCCTGATCCTCTTACTGAAGCTTTAGAATCTGTAGTTGGTGGTGATA 2147
Query 1730 ATGATCAGTTCGGGGCACGGTTACAAGCAGCAGAGCTCGACGCTGAGTGGCCTGATGTGG 1789
|||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2148 ATGATCAGTTGGGGGGACGATTACAAGCAGCAGAGCTCGACGCTGAGTGGCCTGACGTGG 2207
Query 1790 AATCTCTGATCAAAGAGCTGGAAATGGTTGAAGGAATTCAATCAGTTTCAAAAAGTCGTT 1849
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 2208 AATCTCTGATCAAAGAGCTGGAAATGGTTGAAGGAATCCAATCAGTCTCAAAAAGTCGTT 2267
Query 1850 TCTTCTTGAGCCCGGGTCTTGCTCCAACGTTTCAGGTTTACATGGCTCCAATGTTTGAGA 1909
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2268 TCTTCTTGAGTCCGGGTCTTGCTCCAACGTTTCAGGTTTACATGGCTCCAATGTTTGAGA 2327
Query 1910 ACCAATACAAACTGCTTGCTCGAGCTGGACATAGAGTACAAGAGCTTATTGTTCAAGC 1967
||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 2328 ACCAATACAAACTGCTTGCTCGAGCTGGAAACAGAGTACAAGAGCTTATTGTTGAAGC 2385
Score = 392 bits (212), Expect = 6e-108
Identities = 290/326 (89%), Gaps = 11/326 (3%)
Strand=Plus/Plus
Query 1 ATGGACGTTCACGCCTTATCCTCTTCCGCTTCCGCCGCCGCAACCGCCGCACCTGCGTCT 60
|||||||||| |||||||||||||||||||||||||||||| | | ||| || ||
Sbjct 143 ATGGACGTTCTCGCCTTATCCTCTTCCGCTTCCGCCGCCGC-A------C-CCTCCG-CT 193
Query 61 TATATCGCCGGAAACTTCCCGTTGTTTCCTTCTAGTGTTAGATTGAGAAGAAA-CAAGGA 119
| | |||||||||| |||| || |||||||||||| |||||| |||||||||| | | ||
Sbjct 194 TCTCTCGCCGGAAAATTCCTGTCGTTTCCTTCTAGGGTTAGAGTGAGAAGAAACCGA-GA 252
Query 120 TAATTTATTAGCTAAACAGAAGAAATTTGTAGTTTCTGCTTCGAAAAGAGAAGAGCCTAA 179
||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 253 GAATTTGTTAGCTAAACAGAAGAAGTTTTTAGTTTCTGCTTCGAAAAGAGAAGAGCCTAA 312
Query 180 GCTCAACGAATGGGATCAAATGGAGCTCAAGTTCGGACGTTTACTCGGAGAGGACCCGAA 239
|||||||||||||||||||||||||||||| || || ||||||||||| || ||||||||
Sbjct 313 GCTCAACGAATGGGATCAAATGGAGCTCAACTTTGGCCGTTTACTCGGCGAAGACCCGAA 372
Query 240 ATTGACTTTGGCTAAGATAGTGGGTAGAAAAGTGAATCCAGAAGCTTCTTTCGTTGAAAT 299
||||||||||||||||||||| | |||||||||| |||||||||||||||| |||| ||
Sbjct 373 ATTGACTTTGGCTAAGATAGTAGCTAGAAAAGTGGATCCAGAAGCTTCTTTTATTGACAT 432
Query 300 TGAGAAATCTTTCTACAAGAACAAAG 325
||||||||||||||||||||||||||
Sbjct 433 TGAGAAATCTTTCTACAAGAACAAAG 458
Score = 226 bits (122), Expect = 7e-58
Identities = 135/141 (96%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 1472 AGGAAGCTTATA-TTTCGATGAGGCCGAGAGAAAATGAAGAGGAAGTTGAGAAAAAACGA 1530
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 AGGAAGCTTATATTTTCAATGAGGCCGAGAGAAAATGAAGAGGAAGTTGAGAAAAAACGA 1861
Query 1531 AATCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAATGCTGCATCAAGAAGATTACC 1590
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1862 ACTCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAATGCTGCATCAAGAAAATTACC 1921
Query 1591 TATTTCGGTATATTCTGTGAG 1611
||||| ||||| |||||||||
Sbjct 1922 TATTTTGGTATTTTCTGTGAG 1942
Score = 117 bits (63), Expect = 4e-25
Identities = 85/96 (89%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 809 AGAAGCCAGAAGCAAGGCTCGAGCCTGTGAATGTAGAAGAGGAAGTTGGAGATAGCGGAG 868
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 927 AGAAGCCAGAAGCGAGGCTCCAGCCTGTCAATGTAGAAGAGGAAGTTGGAGATAGCGGAG 986
Query 869 CTGCAGAATCATCAGAGATAGAAAATAACTCTATTC 904
| |||||||| ||||||| ||| ||||| ||||
Sbjct 987 GAGTGGAATCATCTGAGATAGTAAACAACTCAATTC 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98242466565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5