BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911036

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12660.1 | Symbols:  | Predicted to encode a PR (pathogenesi...   435    2e-121


> AT1G12660.1 | Symbols:  | Predicted to encode a PR (pathogenesis-related) 
protein.  Belongs to the plant thionin (PR-13) 
family with the following members: At1g66100, At5g36910, At1g72260, 
At2g15010, At1g12663, At1g12660. | chr1:4308943-4309583 
FORWARD LENGTH=414
Length=414

 Score =  435 bits (235),  Expect = 2e-121
 Identities = 285/308 (93%), Gaps = 8/308 (3%)
 Strand=Plus/Plus

Query  1    ATGGAGAACAAAAGAGTGGCCATGTTAGTGGTGATGATGTTGGTGATGGGGAACACGTCG  60
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||  
Sbjct  1    ATGGAGGACAAAAGAGTGGCCATGTTAGTGGTGATGATGTTGGTGATGGGGAACATGTTA  60

Query  61   ATTGAGGCAGTGGCTCTGCCGAAAATGTCTTTTAAAGTATGTTACGGAGGTTGTCTTGTG  120
            |||||||||| ||  ||   |   |||||||||||| |||||||||||||||||||||||
Sbjct  61   ATTGAGGCAGAGG--CT---G-TTATGTCTTTTAAATTATGTTACGGAGGTTGTCTTGTG  114

Query  121  GCGTGTGCTCTAATAGCGCCTGCGATTAAAAAACCTTTTTGTCCTTTTTTGTGTATCAAG  180
            ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct  115  GCGTGTGCTCTAATAGCGCCTCCGATTAAAAAACTTTTTTGTCCTTTTTTGTGTATCAAG  174

Query  181  GATTGTAAACGTCGACCTATACTTTCTTTTGAGGCAAATCTTAAA-GAAATTGACCAGAC  239
            |||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||
Sbjct  175  GATTGTAAACGTCGACCTATGCTTTCTTTTGAGGCAAATC-TAAATGAAATTGACCAAAC  233

Query  240  TGATTCTTTCTGCGAAGTCGGATGTGCTACCGATCGTTGTGTTTCATCCTCCTCAATTGA  299
            || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  234  TGGTTCTTACTGCGAACTCGGATGTGCTACCGATCGTTGTGTTTCATCCTCCTCAATTGA  293

Query  300  TGATAAGG  307
            ||||||||
Sbjct  294  TGATAAGG  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17493176652


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5