BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg911037

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12663.1 | Symbols:  | Predicted to encode a PR (pathogenesi...   490    4e-138


> AT1G12663.1 | Symbols:  | Predicted to encode a PR (pathogenesis-related) 
protein.  Belongs to the plant thionin (PR-13) 
family with the following members: At1g66100, At5g36910, At1g72260, 
At2g15010, At1g12663, At1g12660. | chr1:4310969-4311457 
FORWARD LENGTH=348
Length=348

 Score =  490 bits (265),  Expect = 4e-138
 Identities = 319/344 (93%), Gaps = 7/344 (2%)
 Strand=Plus/Plus

Query  1    ATGTTGGTGGCAGTAATGATAGTGATGGTGATAGGGAACCTCCTGGCTCAGACGACAGAG  60
            ||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||| |
Sbjct  1    ATGTTGGTGGCAGTAATGATAGTGATGGTGATAGGGAACCTTCTGGCTC--A-GACAGCG  57

Query  61   GCTCAGAAAATCCCATTTAAAGATTGTTATCCAGCTTGTCTTATAGAGTGTAAAGCTGAG  120
            ||||| ||||||||||||||||| |||||||||||||||||| | ||||||||||||| |
Sbjct  58   GCTCAAAAAATCCCATTTAAAGAATGTTATCCAGCTTGTCTTGTGGAGTGTAAAGCTG-G  116

Query  121  -TCAAATTTTCCAAAGTATCTTAAGTGTCCATTTACGTGTACCAAA-ACATGTCTTCAAC  178
             ||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct  117  TTCAAAGTTTCCAAAGTATCTTAAGTGTCCATTTACGTGTACCAAAGA-ATGTCTTCAAC  175

Query  179  AACCTCCTCTACCATCTGTTTCTTCAGACAATATCGATGATTCTGATTATTTCTGCAAAC  238
            ||||| ||| |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct  176  AACCTTCTCCACCATCTGTTTCTTCAAACAATATCGATGAATCTGATTATTTCTGCAAAC  235

Query  239  TCGGATGTGCAACTTATCATTGTGTTTCTCTTTCTTCCCTTCAAAACCCGAATATGGAAA  298
            |||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||
Sbjct  236  TCGGATGTGCAACTTATCATTGTGTTTCTCTTTCTTCCATCCAAAATCCGAATGTGGAAA  295

Query  299  GCGTATCAGCCTGTGTCGATTCATGCTCAAACAAGTGTACCAAG  342
            | |||||||| ||||| |||||||||||||||||||||||||||
Sbjct  296  GAGTATCAGCATGTGTGGATTCATGCTCAAACAAGTGTACCAAG  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16739160417


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5