BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911039
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12669.1 | Symbols: | Encodes a Plant thionin family protei... 342 9e-94
> AT1G12669.1 | Symbols: | Encodes a Plant thionin family protein
[pseudogene] | chr1:4315466-4315987 FORWARD LENGTH=391
Length=391
Score = 342 bits (185), Expect = 9e-94
Identities = 216/231 (94%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGCAAAAGAGTCGCTATGTTGATGAATATTATGATAGTGATGGTAATAGGATGC 60
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 1 ATGGAGAGCAAAAGAGTCGCGATGTTGATGAATCTTATGATAGTGATGGTAATGGGATGT 60
Query 61 CTTCTGGTTCAGACAGAGGCTAAGTCTAGCGATTTCAAAGTTTGTTACTCAGATTGTCAT 120
|||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct 61 CTTCTGGTTCAGACAGAGGCTAAGTCTAGCCATTTCAAACTTTGTTACTCAGACTGTCAT 120
Query 121 GCCGTGTGTAAATCTCATACGACGTTTCCAAAGTCTCTCTTGTGTCCCTTCACATGTCTC 180
||| |||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 121 GCC--GTGTAAATCTCATACGACATTTCCAAAGTCTCTTTTGTGTCCATTCACATGTCTC 178
Query 181 ATGACTTGTCTTGTTCCTAATCAACCAACTCCTTCTCCTACTTCTGATACG 231
||||||||||||||||||| || |||||||||||||||| |||||||||||
Sbjct 179 ATGACTTGTCTTGTTCCTACTCTACCAACTCCTTCTCCTGCTTCTGATACG 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13873898724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5