BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg911039 Length=300 Score E Sequences producing significant alignments: (Bits) Value AT1G12669.1 | Symbols: | Encodes a Plant thionin family protei... 342 9e-94 > AT1G12669.1 | Symbols: | Encodes a Plant thionin family protein [pseudogene] | chr1:4315466-4315987 FORWARD LENGTH=391 Length=391 Score = 342 bits (185), Expect = 9e-94 Identities = 216/231 (94%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 1 ATGGAGAGCAAAAGAGTCGCTATGTTGATGAATATTATGATAGTGATGGTAATAGGATGC 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| Sbjct 1 ATGGAGAGCAAAAGAGTCGCGATGTTGATGAATCTTATGATAGTGATGGTAATGGGATGT 60 Query 61 CTTCTGGTTCAGACAGAGGCTAAGTCTAGCGATTTCAAAGTTTGTTACTCAGATTGTCAT 120 |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| Sbjct 61 CTTCTGGTTCAGACAGAGGCTAAGTCTAGCCATTTCAAACTTTGTTACTCAGACTGTCAT 120 Query 121 GCCGTGTGTAAATCTCATACGACGTTTCCAAAGTCTCTCTTGTGTCCCTTCACATGTCTC 180 ||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||| Sbjct 121 GCC--GTGTAAATCTCATACGACATTTCCAAAGTCTCTTTTGTGTCCATTCACATGTCTC 178 Query 181 ATGACTTGTCTTGTTCCTAATCAACCAACTCCTTCTCCTACTTCTGATACG 231 ||||||||||||||||||| || |||||||||||||||| ||||||||||| Sbjct 179 ATGACTTGTCTTGTTCCTACTCTACCAACTCCTTCTCCTGCTTCTGATACG 229 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13873898724 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5