BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911050
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10520.1 | Symbols: | DNA polymerase lambda (POLL) | chr1:3... 1587 0.0
> AT1G10520.1 | Symbols: | DNA polymerase lambda (POLL) | chr1:3465964-3469248
FORWARD LENGTH=1590
Length=1590
Score = 1587 bits (859), Expect = 0.0
Identities = 950/994 (96%), Gaps = 6/994 (1%)
Strand=Plus/Plus
Query 1 ACAGAAATATCACTTGAGATATTTGGAAAGCTAATTAACATATATAGAGCTTTGGGTGAA 60
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 602 ACAGAAATATCAC-TGAGATATTTGGAAAGTTAATTAACATATATAGAGCTTTGGGTGAA 660
Query 61 GATAGACGGTCCTTTAGCTATTACAAAGCTATCCCCATCATTGAAAAGTTCCCCACTAGG 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 GATAGACGGTCCTTTAGCTATTACAAAGCTATCCCCGTCATTGAAAAGTTCCCCACTAGG 720
Query 121 ATTGAAAGCGTTGATCAGCTCAAACACTTCCCTGGAATTGGAAAGGCAATGAGAGATCAT 180
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 721 ATTGAAAGCGTTGATCAGCTCAAACACCTCCCTGGAATCGGAAAGGCAATGAGAGATCAT 780
Query 181 ATTCAAGAGATTGTGACAACAGGGAAGTTGTCCAAGCTTGAACATTTTGAAACAGATGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATTCAAGAGATTGTGACAACAGGGAAGTTGTCCAAGCTTGAACATTTTGAAACAGATGAG 840
Query 241 AAGGTTCGTACAATCAGTTTGTTCGGGGAAGTTTGGGGTATCAGTCCTGCGACTGCACTC 300
||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 841 AAGGTTCGTACAATCAGTTTGTTCGGGGAAGTTTGGGGTGTCGGTCCTGCAACTGCACTC 900
Query 301 AAGCTATATGAGAAAGGACATCGCACACTAGAAGACTTGAAGAACGAGGATTCACTAACG 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 AAGCTATATGAGAAAGGACATCGCACACTAGAAGACTTGAAGAATGAGGATTCACTAACG 960
Query 361 CATGCACA-AAGGTTGGGGTTGAAATATTTTGATGATATCAGAACAAGAATTCCACGTCA 419
|||||||| ||| |||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 961 CATGCACAGAAG-TTGGGGTTGAAATATTTTGATGATATCAAAACACGAATTCCACGTCA 1019
Query 420 CGAGGTGCAAGAGGTGGAACAACTTCTACAGAGAGTCGGCGAGGAAACTTTGCCTGGTGT 479
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1020 GGAGGTGCAAGAGATGGAACAACTTTTACAGAGAGTCGGCGAGGAAACTTTGCCTGGCGT 1079
Query 480 GAATATTGTATGTGGAGGATCATATAGACGTGGGAAAGCTACTTGTACCTACAATCTAGA 539
|||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||
Sbjct 1080 GAATATTGTATGTGGAGGATCATATAGACGTGGGAAAGCTACTTGTGG--AGA-TCTGGA 1136
Query 540 TATAGTTATCACACATCCTGATGGACAAAGTCACAAGGGATTTTTGACAAAGTTTGTAAA 599
||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TATCGTTGTCACCCATCCTGATGGACAAAGTCACAAGGGATTTTTGACAAAGTTTGTAAA 1196
Query 600 GCGTTTAAAAGAAATAAACTTTTTAAGAGAAGATCTCATCTTCAGCACCCACAGTGAAGA 659
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1197 GCGTTTAAAAGAAATGAACTTTTTAAGGGAGGATCTCATCTTCAGCACCCACAGTGAAGA 1256
Query 660 GGGTACTGATTCAGGCGTTGACACTTATTTTGGCCTGTGCACTTATCCTGGTCAGGAGCT 719
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1257 GGGTACTGATTCAGGCGTTGACACGTATTTTGGTTTGTGCACTTATCCTGGTCAGGAGCT 1316
Query 720 ACGGCGCCATATCGATTTTAAGGTTTATCCAAGGGATATCTATGCATTTGGACTCATAGC 779
|||||||| ||||||||||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 1317 ACGGCGCCGTATCGATTTTAAGGTCTATCCAAGGGATATCTATTCGTTTGGACTCATAGC 1376
Query 780 TTGGACAGGGAACGACGTGTTGAACAGAAGGCTGAGATTGCTAGCAGAATCCAAAGGATA 839
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1377 CTGGACAGGGAACGACGTGTTGAACAGAAGGCTGAGATTGCTAGCAGAATCGAAAGGATA 1436
Query 840 TCGACTTGATGACACTGGACTGTTCCCAGCTACTCACAGTTCTAGCGGTAACCGGGGTGC 899
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1437 TCGACTTGACGACACTGGACTATTCCCAGCTACTCACAGTTCTAGTGGTAACCGGGGTGC 1496
Query 900 TAGAGGAACTGCAAGTCTGAAACTCTCAACGGAGAAACAAGTGTTCGATTTCTTAGGATT 959
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1497 TAGAGGAACTGCAAGTCTGAAACTCTCAACGGAGAAACAAGTTTTTGATTTCTTAGGATT 1556
Query 960 TCCTTGGCTCGAGCCACACGAGAGGAATCTCTAA 993
||||||||||||||||||||||||||||||||||
Sbjct 1557 TCCTTGGCTCGAGCCACACGAGAGGAATCTCTAA 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5