BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911052
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12800.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 1312 0.0
> AT1G12800.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr1:4361551-4365331 REVERSE LENGTH=2673
Length=2673
Score = 1312 bits (710), Expect = 0.0
Identities = 813/860 (95%), Gaps = 18/860 (2%)
Strand=Plus/Plus
Query 2 TGGAATCATCTGAGATAGAAAATAACTCAATTCCAAC-GAGAT---G-TC-CT--CGGGA 53
|||||||||| |||||||||||||| ||||||||||| || || | || | || ||
Sbjct 1086 TGGAATCATCGGAGATAGAAAATAATTCAATTCCAACTGAAATGCAGCTCAATAGCGAGA 1145
Query 54 --TCCTCTGAGGAGAAAACCGTTAACAGTGATCCACTCGAGAGAATTCCTTCGAAACCAA 111
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TGTCCTCTGAGGAGAAAACTATTAACAGTGATCCACTCGAGAGAATTCCTTCGAAACCAA 1205
Query 112 TTTTCTCAAACCATCGTAGAAGCTTCTTTACAAGGGAAACCAC--A-ATTAGACCCGTCT 168
|||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct 1206 -TTTCTCAAACCATCGTCGAAGCTTCTTTACAAGGGAAACCACAAAGATTAGACCCGTCT 1264
Query 169 TCCG-TGGAGCCATCAGTTTC-AACCAAAGGACAACCGTTAATCGTGAACTATGAAGGCC 226
|||| | |||||||||||| | || || |||| |||||| | |||||||| |||||||||
Sbjct 1265 TCCGCT-GAGCCATCAGTTCCGAA-CATAGGAAAACCGTCAGTCGTGAACCATGAAGGCC 1322
Query 227 GTCAGGTCTCTGTTGAGCTCAAGGGCCCTCCTACCAGATCGTCCTTGGAGGAAAATGATT 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GTCAGGTCTCTGTTGAGCTCAAGGGCCCTCCTACCAGATCGTCCTTGGAGGAAAATGATT 1382
Query 287 GGAATAAGGCAGAGTCTCTAGTTAAAACAGAATTACGAGCAGATGTTGAGCTAATAAGTT 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GGAATAAGGCAGAGTCTCTAGTTAAAACAGAATTACGAGCAGATGTTGAGCTAATAAGTT 1442
Query 347 CAAGCACTAGAGGATTTGCTGTTTCCTATGGATCTTTGATCGGATTTTTACCCTACCGGA 406
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1443 CAAGCACTAGAGGATTTGCTGTTTCCTATGGATCTTTGATTGGATTTTTACCCTACCGGA 1502
Query 407 ACCTAGCAGCAAAATGGAAATTTCTCGCATTTGAATCATGGTTAAGAAGAAAAGGTGTAG 466
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 ACCTTGCAGCAAAATGGAAGTTTCTCGCATTTGAATCATGGTTAAGAAGAAAAGGTGTAG 1562
Query 467 ATCCATCACTGTATCGACAAAACCTTGGGGTAATCGGAGGTCAAGATGTCACAAGTAAAG 526
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1563 ATCCATCACCGTATCGACAAAACCTTGGGGTAATTGGAGGTCAAGATGTCACGAGTAAAT 1622
Query 527 CTCCATCTCCAGATTCAAGCTTAGATTCTGAAGTCGCTACATCGATCAACGGAGAAGTTT 586
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1623 CTCCATCTCCAGATTCAAGCTTAGATTCTGAAGTCGCTACAACGATCAACGGAGAAGTTT 1682
Query 587 CTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATATGACAGAGAAAAGCAGAAGTTCC 646
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1683 CTTCTGATATGAAGCTGGAAGATCTTCTTATGGTATATGACAGAGAGAAGCAGAAGTTCC 1742
Query 647 TGTCATCTTTTGTTGGCCAGAAAATCAAAGTGAATGTTGTTATGGCTAATCGAAACTCAA 706
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1743 TGTCATCTTTTGTTGGTCAGAAAATCAAAGTGAATGTTGTTATGGCAAATCGAAATTCAA 1802
Query 707 GGAAGCTTATATTTTCGATGAGGCCGAGAGAAAATGAAGAGGAAGTTGAGAAAAAACGAA 766
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 GGAAGCTTATATTTTCAATGAGGCCGAGAGAAAATGAAGAGGAAGTTGAGAAAAAACGAA 1862
Query 767 ATCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAATGCTGCATCAAGAAAATTACCT 826
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 CTCTTATGGCTAAGCTTCGTGTTGGGGATGTTGTGAAATGCTGCATCAAGAAAATTACCT 1922
Query 827 ATTTTGGTATTTTTTGTGAG 846
||||||||||||| ||||||
Sbjct 1923 ATTTTGGTATTTTCTGTGAG 1942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5