BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg911072
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bH... 1834 0.0
AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-he... 571 5e-162
> AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:4384353-4386610
FORWARD LENGTH=1976
Length=1976
Score = 1834 bits (993), Expect = 0.0
Identities = 1261/1381 (91%), Gaps = 56/1381 (4%)
Strand=Plus/Plus
Query 1 ATGAACGGCGACGGTGTTTGGCTTGACGGCGCCGGTGAATCTCCGGAGGTTAATAACGGT 60
|||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 406 ATGAACAGCGACGGTGTTTGGCTTGACGGCTCCGGTGAATCTCCGGAAGTTAATAACGGT 465
Query 61 GAAGCTGCGTCGTGGGTCAGAAACCCAGATGAGGATTGGTTCAATAACCCACCACCACCA 120
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 466 GAAGCTGCGTCTTGGGTCAGAAACCCAGATGAAGACTGGTTCAATAACCCACCACCACCA 525
Query 121 CAACAAATCCTCCACAGTAACCAAAATGACTTCAGATTCAATGGTGGGTTTCCATTAAAC 180
|||| | ||| ||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct 526 CAAC--A-----CAC--TAATCAAAACGACTTCAGATTCAATGGTGGCTTTCCTTTAAAC 576
Query 181 CCCTCAGAGAATCTGCTTCTTCTTCTTCAGCAATCGATTGA---TTCGTCTTGTTCTGCT 237
||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||
Sbjct 577 CCCTCAGAGAATCTGCTTCTTCTTCTTCAGCAATCGATTGATTCTTCTTCTTCTTCTTCT 636
Query 238 CCG---TTACATCCTTTCACACTCGACGCTGCTT-----C-acaacaacaacaacaacaa 288
||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 637 CCGTTATTACATCCTTTCACACTCGACGCTGCTTCACAGCAACAACAACAACAACAACAA 696
Query 289 c-a-a-GAACAGTCTTTCTTAGCTACAAAAGCTTGCATAGCTTCTCTTCTCAATGTCCCA 345
| | | |||||||||||||||||||| |||||||| |||| |||||||||||| ||||||
Sbjct 697 CAACAGGAACAGTCTTTCTTAGCTACGAAAGCTTGTATAGTTTCTCTTCTCAACGTCCCA 756
Query 346 ACCAGCAATATCAACACTTTCGATGAATTCGGCTTTGATTCTGGGTTT-TTGA-GTCAAC 403
|||| ||||| ||||||||||||||| ||||||||||| ||| ||||| || | | ||||
Sbjct 757 ACCATCAATAACAACACTTTCGATGACTTCGGCTTTGACTCT-GGTTTCTT-AGGACAAC 814
Query 404 AATTCCATGG-AA--ATCAATCTCCAAACTCGATGAATTTCGCTGGATTGAACCAC-CAG 459
|||||||||| || |||||||||| ||||||||||||||| |||| || |||||| ||
Sbjct 815 AATTCCATGGAAATCATCAATCTCCGAACTCGATGAATTTCACTGGCTTAAACCACTCA- 873
Query 460 GGACCGGATTTTCTCACTTCCCGGTCAATTCCAGCGCCGGAAAACAGCTCAGGATCATGT 519
| |||||| | || || ||||||| ||||||||||||||||||||||||
Sbjct 874 GTACCGGA-----T---TT-----TC--TTCCAGCTCCGGAAAACAGCTCAGGATCATGT 918
Query 520 GGATTGAGTCCTCTGTTC-GAGAACAGAACAAAGGTTCTGAAGCCATTAGAGGTGTTGGC 578
|||||||||||||||||| | |||||| |||||||| | || || ||| |||| ||||
Sbjct 919 GGATTGAGTCCTCTGTTCTCA-AACAGAGCAAAGGTTTTAAAACCGTTACAGGTAATGGC 977
Query 579 TTCATCTGGCTCGCAGCCAACTTTGTTTCAGAAACGAGCTGCAATGCGTCAGAGTTCGAG 638
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 978 TTCATCTGGCTCGCAGCCAACTCTGTTTCAGAAACGAGCTGCAATGCGTCAGAGCTCGAG 1037
Query 639 TAGCAAAATGTGCAATTCAGAGAGTTCTTCTGAAATGAGGAAATCGAGCTACGAGAGAGA 698
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TAGCAAAATGTGCAATTCTGAGAGTTCTTCTGAAATGAGGAAATCGAGCTACGAGAGAGA 1097
Query 699 GATTGACGATACGAGTACCGGAATCATCGATATCTCTGGATTGAACTACGAATCTGATGA 758
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1098 GATTGACGATACTAGTACCGGAATCATCGATATCTCTGGATTGAATTACGAATCTGATGA 1157
Query 759 GCAT-AT--TAAT---AATAaaggtaagaagaaaggaatgcctgcaaagaatctaatggc 812
||| || |||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1158 CCATAATACTAATAACAACAAAGGTAAGAAGAAAGGAATGCCTGCAAAGAATCTTATGGC 1217
Query 813 tgagagaagaagaaggaagaagCTTAATGATAGGCTTTACATGCTTAGATCAGTTGTTCC 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TGAGAGAAGAAGAAGGAAGAAGCTTAATGATAGGCTTTACATGCTTAGATCAGTTGTTCC 1277
Query 873 CAAGATCAGCAAAATGGATAGAGCAGCAATACTTGGAGATGCTATTGATTACCTCAAAGA 932
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1278 CAAGATCAGCAAAATGGATAGAGCATCAATACTTGGAGATGCTATTGATTACCTCAAAGA 1337
Query 933 GCTCTTACAGAGAATCAACGATCTTCATACCGAACTAGAGTCTACTCCACCGAGTTCTTC 992
||| ||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 1338 GCTTTTACAAAGAATCAACGATCTTCACACCGAACTTGAATCTACTCCACCGAGTTCTTC 1397
Query 993 AAGCTTGCACCCGTTAACACCGACTCCACAAACGCTATCTTACCGTGTTAAGGAAGAGTT 1052
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1398 AAGCTTGCATCCGTTAACACCGACTCCACAAACGCTGTCTTACCGTGTTAAGGAAGAGTT 1457
Query 1053 GTGTCCATCTTCCTCCTTGCCAAGCCCTAAAGGCCAGCAACCGAGAGTTGAGGTTAGATT 1112
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1458 GTGTCCATCTTCCTCCTTGCCAAGTCCTAAAGGCCAACAACCAAGAGTTGAGGTTAGATT 1517
Query 1113 AAGGGAAGGAAAGGCAGTGAACATTCACATGTTCTGTGGACGTAGACCAGGTCTTTTGCT 1172
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1518 AAGAGAAGGAAAGGCAGTGAACATACACATGTTCTGTGGACGTAGACCAGGTCTTTTACT 1577
Query 1173 TTCCACCATGAGAGCTTTGGATAACTTAGGATTGGATGTTCAACAAGCTGTGATTAGCTG 1232
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1578 TTCCACCATGAGAGCTTTGGATAACTTAGGATTGGATGTTCAACAAGCGGTGATTAGCTG 1637
Query 1233 TTTCAACGGTTTTGCTTTGGATGTTTTCCGCGCTGAGCAATGCCAAGAAGACCATGACGT 1292
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1638 TTTCAATGGTTTTGCTTTGGATGTTTTCCGCGCTGAGCAATGTCAAGAAGACCATGACGT 1697
Query 1293 GTTGCCTGAACAAATCAAAGCAGTGCTTTTAGACACAGCAGGTTACGCTGGTTTGGTTTG 1352
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1698 GTTACCTGAACAAATCAAAGCAGTGCTTTTAGATACAGCAGGTTACGCTGGTTTGGTTTG 1757
Query 1353 A 1353
|
Sbjct 1758 A 1758
> AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein | chr3:9832689-9835087
REVERSE LENGTH=2046
Length=2046
Score = 571 bits (309), Expect = 5e-162
Identities = 504/594 (85%), Gaps = 29/594 (5%)
Strand=Plus/Plus
Query 772 Aaa-ggtaagaagaaaggaatgcctgcaaagaatctaatggctgagagaagaagaaggaa 830
||| |||||||||||||| |||||||| |||||||| ||||||||||| ||||| |||||
Sbjct 1188 AAAGGGTAAGAAGAAAGGTATGCCTGCTAAGAATCTGATGGCTGAGAGGAGAAGGAGGAA 1247
Query 831 gaagCTTAATGATAGGCTTTACATGCTTAGATCAGTTGTTCCCAAGATCAGCAAAATGGA 890
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1248 GAAGCTTAATGATAGGCTTTATATGCTTAGATCAGTTGTCCCCAAGATCAGCAAAATGGA 1307
Query 891 TAGAGCAGCAATACTTGGAGATGCTATTGATTACCTCAAAGAGC-TCTTACAGAGAATCA 949
||||||| |||||||||||||||| |||||||| || || || | || |||| || ||||
Sbjct 1308 TAGAGCATCAATACTTGGAGATGCAATTGATTATCTGAAGGAACTTC-TACAAAGGATCA 1366
Query 950 ACGATCTTCATACCGAACTAGAGTCTACTCCACC--GA-----G--------TTCTTCAA 994
| |||||||| | ||||| ||||| ||||| || || | ||| ||||
Sbjct 1367 ATGATCTTCACAATGAACTTGAGTCAACTCCTCCTGGATCTTTGCCTCCAACTTCATCAA 1426
Query 995 GCTTGCACCCGTTAACACCGACTCCACAAACGCTATCTTACCGTGTTAAGGAAGAGTTGT 1054
|||| || ||||| ||||| || || ||||| || |||| ||||| |||||||||||||
Sbjct 1427 GCTTCCATCCGTTGACACCTACACCGCAAACTCTTTCTTGTCGTGTCAAGGAAGAGTTGT 1486
Query 1055 GTCCATCTTCCTCCTTGCCAAGCCCTAAAGGCCAGCAACCGAGAGTTGAGGTTAGATTAA 1114
|||| |||| || || ||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 1487 GTCCCTCTT-CT--TTACCAAGTCCTAAAGGCCAGCAAGCTAGAGTTGAGGTTAGATTAA 1543
Query 1115 GGGAAGGAAAG-GCAGTGAACATTCACATGTTCTGTGGACGTAGACCAGGTCTTTTGCTT 1173
||||||| ||| |||||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct 1544 GGGAAGG-AAGAGCAGTGAACATTCATATGTTCTGTGGTCGTAGACCGGGTCTGTTGCTC 1602
Query 1174 TCCACCATGAGAGCTTTGGATAA-CTTAGGATTGGATGTTCAACAAGCTGTGATTAGCTG 1232
| ||||||| |||||||||||| ||| |||||||||||||| ||||||||||| |||||
Sbjct 1603 GCTACCATGAAAGCTTTGGATAATCTT-GGATTGGATGTTCAGCAAGCTGTGATCAGCTG 1661
Query 1233 TTTCAACGGTTTTGCTTTGGATGTTTTCCGCGCTGAGCAATGCCAAGAAG-ACCATGACG 1291
||| || || ||||| |||||||||||||||||||||||||||||||||| || | || |
Sbjct 1662 TTTTAATGGGTTTGCCTTGGATGTTTTCCGCGCTGAGCAATGCCAAGAAGGACAA-GA-G 1719
Query 1292 -TGTTGCCTGAACAAATCAAAGCAGTGCTTTTAGACACAGCAGGTTACGCTGGT 1344
| ||||||| |||||||||||||||||||| || |||||||| || ||||||
Sbjct 1720 ATACTGCCTGATCAAATCAAAGCAGTGCTTTTCGATACAGCAGGGTATGCTGGT 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66616123215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5